X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fext%2Fjmol%2FJmolParser.java;h=180da8f449f8044e4f522fb5f758a5dc1b4fd277;hb=2681593fa6810815547b688b89424c837cac1240;hp=c73657f8e3e1fc2e9f007f8a426b81eb1be30d73;hpb=e97cd6659f6bcac55dc030e770192b0044960dc5;p=jalview.git

diff --git a/src/jalview/ext/jmol/JmolParser.java b/src/jalview/ext/jmol/JmolParser.java
index c73657f..180da8f 100644
--- a/src/jalview/ext/jmol/JmolParser.java
+++ b/src/jalview/ext/jmol/JmolParser.java
@@ -38,8 +38,6 @@ import java.util.List;
 import java.util.Map;
 import java.util.Vector;
 
-import javajs.awt.Dimension;
-
 import org.jmol.api.JmolStatusListener;
 import org.jmol.api.JmolViewer;
 import org.jmol.c.CBK;
@@ -124,12 +122,11 @@ public class JmolParser extends StructureFile implements JmolStatusListener
       try
       {
         /*
-         * params -o (output to sysout) -i (no info logging, less verbose)
-         * -n (nodisplay) -x (exit when finished)
+         * params -o (output to sysout) -n (nodisplay) -x (exit when finished)
          * see http://wiki.jmol.org/index.php/Jmol_Application
          */
         viewer = (Viewer) JmolViewer.allocateViewer(null, null, null, null,
-                null, "-x -o -n -i", this);
+                null, "-x -o -n", this);
         // ensure the 'new' (DSSP) not 'old' (Ramachandran) SS method is used
         viewer.setBooleanProperty("defaultStructureDSSP", true);
       } catch (ClassCastException x)
@@ -155,10 +152,12 @@ public class JmolParser extends StructureFile implements JmolStatusListener
       if (pdbId == null)
       {
         setId(safeName(getDataName()));
+        setPDBIdAvailable(false);
       }
       else
       {
         setId(pdbId);
+        setPDBIdAvailable(true);
       }
       List<Atom> significantAtoms = convertSignificantAtoms(ms);
       for (Atom tmpatom : significantAtoms)
@@ -625,7 +624,7 @@ public class JmolParser extends StructureFile implements JmolStatusListener
    * Not implemented - returns null
    */
   @Override
-  public Dimension resizeInnerPanel(String data)
+  public int[] resizeInnerPanel(String data)
   {
     return null;
   }