X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fext%2Fjmol%2FJmolParser.java;h=baebe083a65fc61409c39acedfc7618db6afcad6;hb=d28fba781c93c83b6082e74b22a8bf52d241d609;hp=7056f0fd99466d6c5bef3fa3db24e03aaee5c0ad;hpb=65c671b0263c0c692a4a0a0905a4acc2fc6b1065;p=jalview.git

diff --git a/src/jalview/ext/jmol/JmolParser.java b/src/jalview/ext/jmol/JmolParser.java
index 7056f0f..baebe08 100644
--- a/src/jalview/ext/jmol/JmolParser.java
+++ b/src/jalview/ext/jmol/JmolParser.java
@@ -219,7 +219,12 @@ public class JmolParser extends StructureFile implements JmolStatusListener
         curAtom.resNumIns = "" + curAtom.resNumber + curAtom.insCode;
         curAtom.tfactor = atom.getBfactor100() / 100f;
         curAtom.type = 0;
-        significantAtoms.add(curAtom);
+        // significantAtoms.add(curAtom);
+        // ignore atoms from subsequent models
+        if (!significantAtoms.contains(curAtom))
+        {
+          significantAtoms.add(curAtom);
+        }
         prevAtom = atom;
       }
     }
@@ -230,6 +235,8 @@ public class JmolParser extends StructureFile implements JmolStatusListener
           org.jmol.modelset.Atom prevAtom,
           HashMap<String, org.jmol.modelset.Atom> chainTerMap)
   {
+    // System.out.println("Atom: " + curAtom.getAtomNumber()
+    // + "   Last atom index " + curAtom.group.lastAtomIndex);
     if (chainTerMap == null || prevAtom == null)
     {
       return true;