X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fext%2Fjmol%2FPDBFileWithJmol.java;h=69cb8bd2320714635bc29a9997f641aa3897f33a;hb=9ac8472a4a1db8f17916f15690483af3bf97c495;hp=ddfa1b056195dc6d68dcd512c6ecceee3d7706f7;hpb=231e656ad21658b53eda2237b61547db74894e51;p=jalview.git

diff --git a/src/jalview/ext/jmol/PDBFileWithJmol.java b/src/jalview/ext/jmol/PDBFileWithJmol.java
index ddfa1b0..69cb8bd 100644
--- a/src/jalview/ext/jmol/PDBFileWithJmol.java
+++ b/src/jalview/ext/jmol/PDBFileWithJmol.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
- * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Copyright (C) 2015 The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -86,8 +86,9 @@ public class PDBFileWithJmol extends AlignFile implements
                 null, "-x -o -n", this);
       } catch (ClassCastException x)
       {
-        throw new Error(MessageManager.formatMessage("error.jmol_version_not_compatible_with_jalview_version", new String[]{JmolViewer.getJmolVersion()}),
-                x);
+        throw new Error(MessageManager.formatMessage(
+                "error.jmol_version_not_compatible_with_jalview_version",
+                new String[] { JmolViewer.getJmolVersion() }), x);
       }
     }
     return viewer;
@@ -236,7 +237,8 @@ public class PDBFileWithJmol extends AlignFile implements
                * equivalent (e.g. MSE with MET->M) to maximise sequence matching
                */
               String threeLetterCode = group.getGroup3();
-              String canonical = ResidueProperties.getCanonicalAminoAcid(threeLetterCode);
+              String canonical = ResidueProperties
+                      .getCanonicalAminoAcid(threeLetterCode);
               if (canonical != null
                       && !canonical.equalsIgnoreCase(threeLetterCode))
               {