X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fext%2Fparadise%2FAnnotate3D.java;h=55c3c1dd4cf9342e75f38dad3af4d2158cef5f80;hb=1ae9824ef37ce4ed36d1da986003474b47d1ab11;hp=3930fc042d645a17d3df039a405532f1369a66c4;hpb=b13f521553582ef2fbfd7815ae25e23284babdea;p=jalview.git diff --git a/src/jalview/ext/paradise/Annotate3D.java b/src/jalview/ext/paradise/Annotate3D.java index 3930fc0..55c3c1d 100644 --- a/src/jalview/ext/paradise/Annotate3D.java +++ b/src/jalview/ext/paradise/Annotate3D.java @@ -1,6 +1,6 @@ /* - * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2) - * Copyright (C) 2014 The Jalview Authors + * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) + * Copyright (C) $$Year-Rel$$ The Jalview Authors * * This file is part of Jalview. * @@ -23,13 +23,13 @@ package jalview.ext.paradise; import jalview.util.MessageManager; import jalview.ws.HttpClientUtils; +import java.io.BufferedReader; import java.io.IOException; import java.io.InputStreamReader; import java.io.Reader; import java.io.StringReader; import java.net.URL; import java.util.ArrayList; -import java.util.Collection; import java.util.Iterator; import java.util.List; @@ -37,7 +37,6 @@ import org.apache.http.NameValuePair; import org.apache.http.message.BasicNameValuePair; import org.json.simple.JSONArray; import org.json.simple.JSONObject; -import org.json.simple.JSONStreamAware; import org.json.simple.parser.ContentHandler; import org.json.simple.parser.ParseException; @@ -138,7 +137,8 @@ public class Annotate3D // return processJsonResponseFor(HttpClientUtils.doHttpUrlPost(twoDtoolsURL, // vals)); ArrayList readers = new ArrayList(); - readers.add(HttpClientUtils.doHttpUrlPost(twoDtoolsURL, vals)); + final BufferedReader postResponse = HttpClientUtils.doHttpUrlPost(twoDtoolsURL, vals, 0, 0); + readers.add(postResponse); return readers.iterator(); }