X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fext%2Fparadise%2FAnnotate3D.java;h=885945eaaf284af94c408a4db4f2f71f64dcebb7;hb=9876fdccf311378e690c1f9e18db52675d427b89;hp=48420332b5d3190d3bc1353dd54d74ac6415afcd;hpb=7ab5d6b0ba5fec1ea4a4239e79c476d841622485;p=jalview.git

diff --git a/src/jalview/ext/paradise/Annotate3D.java b/src/jalview/ext/paradise/Annotate3D.java
index 4842033..885945e 100644
--- a/src/jalview/ext/paradise/Annotate3D.java
+++ b/src/jalview/ext/paradise/Annotate3D.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Copyright (C) 2015 The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -20,15 +20,16 @@
  */
 package jalview.ext.paradise;
 
+import jalview.util.MessageManager;
 import jalview.ws.HttpClientUtils;
 
+import java.io.BufferedReader;
 import java.io.IOException;
 import java.io.InputStreamReader;
 import java.io.Reader;
 import java.io.StringReader;
 import java.net.URL;
 import java.util.ArrayList;
-import java.util.Collection;
 import java.util.Iterator;
 import java.util.List;
 
@@ -36,7 +37,6 @@ import org.apache.http.NameValuePair;
 import org.apache.http.message.BasicNameValuePair;
 import org.json.simple.JSONArray;
 import org.json.simple.JSONObject;
-import org.json.simple.JSONStreamAware;
 import org.json.simple.parser.ContentHandler;
 import org.json.simple.parser.ParseException;
 
@@ -137,7 +137,9 @@ public class Annotate3D
     // return processJsonResponseFor(HttpClientUtils.doHttpUrlPost(twoDtoolsURL,
     // vals));
     ArrayList<Reader> readers = new ArrayList<Reader>();
-    readers.add(HttpClientUtils.doHttpUrlPost(twoDtoolsURL, vals));
+    final BufferedReader postResponse = HttpClientUtils.doHttpUrlPost(
+            twoDtoolsURL, vals, 0, 0);
+    readers.add(postResponse);
     return readers.iterator();
 
   }
@@ -189,14 +191,16 @@ public class Annotate3D
         @Override
         public void remove()
         {
-          throw new Error("Remove: Not implemented");
+          throw new Error(
+                  MessageManager.getString("error.not_implemented_remove"));
 
         }
 
         @Override
         protected Object clone() throws CloneNotSupportedException
         {
-          throw new CloneNotSupportedException("Clone: Not implemented");
+          throw new CloneNotSupportedException(
+                  MessageManager.getString("error.not_implemented_clone"));
         }
 
         @Override
@@ -218,7 +222,9 @@ public class Annotate3D
     } catch (Exception foo)
     {
       throw new Exception(
-              "Couldn't parse response from Annotate3d server.", foo);
+              MessageManager
+                      .getString("exception.couldnt_parse_responde_from_annotated3d_server"),
+              foo);
     }
 
   }