X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fext%2Fparadise%2FAnnotate3D.java;h=d50ad878f1b1857666001ba4f500aac466c77416;hb=b513684c725997c77341f30ce4e584cf9f7cdfed;hp=e28d576569f16eed0a1c3ff8bb5c8a94e58b68e7;hpb=db93a1adcbe0a4eaaf06e0a70ade0d6c5c1961c3;p=jalview.git

diff --git a/src/jalview/ext/paradise/Annotate3D.java b/src/jalview/ext/paradise/Annotate3D.java
index e28d576..d50ad87 100644
--- a/src/jalview/ext/paradise/Annotate3D.java
+++ b/src/jalview/ext/paradise/Annotate3D.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b2)
- * Copyright (C) 2015 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -94,8 +94,8 @@ public class Annotate3D
       }
 
       @Override
-      public boolean startObjectEntry(String key) throws ParseException,
-              IOException
+      public boolean startObjectEntry(String key)
+              throws ParseException, IOException
       {
         // TODO Auto-generated method stub
         return false;
@@ -123,8 +123,8 @@ public class Annotate3D
       }
 
       @Override
-      public boolean primitive(Object value) throws ParseException,
-              IOException
+      public boolean primitive(Object value)
+              throws ParseException, IOException
       {
         // TODO Auto-generated method stub
         return false;
@@ -144,8 +144,8 @@ public class Annotate3D
     // return processJsonResponseFor(HttpClientUtils.doHttpUrlPost(twoDtoolsURL,
     // vals));
     ArrayList<Reader> readers = new ArrayList<Reader>();
-    final BufferedReader postResponse = HttpClientUtils.doHttpUrlPost(
-            twoDtoolsURL, vals, 0, 0);
+    final BufferedReader postResponse = HttpClientUtils
+            .doHttpUrlPost(twoDtoolsURL, vals, 0, 0);
     readers.add(postResponse);
     return readers.iterator();
 
@@ -183,15 +183,15 @@ public class Annotate3D
           ;
           if (sval == null)
           {
-            System.err
-                    .println("DEVELOPER WARNING: Annotate3d didn't return a '2D' tag in its response. Consider checking output of server. Response was :"
+            System.err.println(
+                    "DEVELOPER WARNING: Annotate3d didn't return a '2D' tag in its response. Consider checking output of server. Response was :"
                             + val.toString());
 
             sval = "";
           }
-          return new StringReader(
-                  (sval instanceof JSONObject) ? ((JSONObject) sval)
-                          .toString() : sval.toString());
+          return new StringReader((sval instanceof JSONObject)
+                  ? ((JSONObject) sval).toString()
+                  : sval.toString());
 
         }
 
@@ -228,9 +228,8 @@ public class Annotate3D
       };
     } catch (Exception foo)
     {
-      throw new Exception(
-              MessageManager
-                      .getString("exception.couldnt_parse_responde_from_annotated3d_server"),
+      throw new Exception(MessageManager.getString(
+              "exception.couldnt_parse_responde_from_annotated3d_server"),
               foo);
     }