X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fext%2Frbvi%2Fchimera%2FChimeraCommands.java;h=62aaa1cf2e496520b6a882996eaabf5200075fcf;hb=defcce0ef74ffc0923b4387bcb5f0d867bf64831;hp=1d8b9443e160058600f2ee3d54f16f40571fa0b2;hpb=2888e7307e1f7c8239234941498cb86e8c65ab36;p=jalview.git

diff --git a/src/jalview/ext/rbvi/chimera/ChimeraCommands.java b/src/jalview/ext/rbvi/chimera/ChimeraCommands.java
index 1d8b944..62aaa1c 100644
--- a/src/jalview/ext/rbvi/chimera/ChimeraCommands.java
+++ b/src/jalview/ext/rbvi/chimera/ChimeraCommands.java
@@ -25,7 +25,7 @@ import jalview.api.AlignmentViewPanel;
 import jalview.api.FeatureRenderer;
 import jalview.api.SequenceRenderer;
 import jalview.datamodel.AlignmentI;
-import jalview.datamodel.ColumnSelection;
+import jalview.datamodel.HiddenColumns;
 import jalview.datamodel.SequenceFeature;
 import jalview.datamodel.SequenceI;
 import jalview.renderer.seqfeatures.FeatureColourFinder;
@@ -194,7 +194,7 @@ public class ChimeraCommands
     FeatureRenderer fr = viewPanel.getFeatureRenderer();
     FeatureColourFinder finder = new FeatureColourFinder(fr);
     AlignViewportI viewport = viewPanel.getAlignViewport();
-    ColumnSelection cs = viewport.getColumnSelection();
+    HiddenColumns cs = viewport.getAlignment().getHiddenColumns();
     AlignmentI al = viewport.getAlignment();
     Map<Object, AtomSpecModel> colourMap = new LinkedHashMap<Object, AtomSpecModel>();
     Color lastColour = null;
@@ -240,7 +240,6 @@ public class ChimeraCommands
                */
               if (!cs.isVisible(r))
               {
-                // colour = ColorUtils.darkerThan(colour);
                 colour = Color.GRAY;
               }