X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fext%2Fvarna%2FRnaModel.java;h=14249302a669adca844b45e199999945c153de73;hb=924cfa64826c1c4d7f14672d6f773567acf46282;hp=44c6cf6bac86b4212f8fdfae96c4754b828d6ff6;hpb=7aef14d879f7bfb8af464a6b7700a99413eab0c6;p=jalview.git diff --git a/src/jalview/ext/varna/RnaModel.java b/src/jalview/ext/varna/RnaModel.java index 44c6cf6..1424930 100644 --- a/src/jalview/ext/varna/RnaModel.java +++ b/src/jalview/ext/varna/RnaModel.java @@ -1,10 +1,30 @@ +/* + * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) + * Copyright (C) $$Year-Rel$$ The Jalview Authors + * + * This file is part of Jalview. + * + * Jalview is free software: you can redistribute it and/or + * modify it under the terms of the GNU General Public License + * as published by the Free Software Foundation, either version 3 + * of the License, or (at your option) any later version. + * + * Jalview is distributed in the hope that it will be useful, but + * WITHOUT ANY WARRANTY; without even the implied warranty + * of MERCHANTABILITY or FITNESS FOR A PARTICULAR + * PURPOSE. See the GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public License + * along with Jalview. If not, see . + * The Jalview Authors are detailed in the 'AUTHORS' file. + */ package jalview.ext.varna; -import fr.orsay.lri.varna.models.rna.RNA; - import jalview.datamodel.AlignmentAnnotation; import jalview.datamodel.SequenceI; +import fr.orsay.lri.varna.models.rna.RNA; + /** * Data bean wrapping the data items that define one RNA view */ @@ -20,18 +40,13 @@ public class RnaModel public final RNA rna; - // path to a file holding VARNA session state XML - public final String varnaSession; - public RnaModel(String t, AlignmentAnnotation aa, SequenceI s, RNA r, - boolean g, - String sessionFile) + boolean g) { title = t; ann = aa; seq = s; - gapped = g; rna = r; - varnaSession = sessionFile; + gapped = g; } -} \ No newline at end of file +}