X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Ffts%2Fcore%2FFTSRestRequest.java;h=6a54ebface86f78ff41bd3818c790f6e278ef2f0;hb=0862857e6b49fefb790d20495b190a55b7b611f6;hp=2e1c632cae6957a2e601773660b3719e64023269;hpb=853624fb32058cccc544ae7d13af6ad4b0800b6c;p=jalview.git

diff --git a/src/jalview/fts/core/FTSRestRequest.java b/src/jalview/fts/core/FTSRestRequest.java
index 2e1c632..6a54ebf 100644
--- a/src/jalview/fts/core/FTSRestRequest.java
+++ b/src/jalview/fts/core/FTSRestRequest.java
@@ -45,8 +45,8 @@ public class FTSRestRequest
 
   private boolean allowEmptySequence;
 
-  private boolean allowUnpublishedEntries = Cache.getDefault(
-          "ALLOW_UNPUBLISHED_PDB_QUERYING", false);
+  private boolean allowUnpublishedEntries = Cache
+          .getDefault("ALLOW_UNPUBLISHED_PDB_QUERYING", false);
 
   private boolean facet;
 
@@ -117,7 +117,8 @@ public class FTSRestRequest
     return fieldToSortBy;
   }
 
-  public void setFieldToSortBy(String fieldToSortBy, boolean isSortAscending)
+  public void setFieldToSortBy(String fieldToSortBy,
+          boolean isSortAscending)
   {
     this.fieldToSortBy = fieldToSortBy;
     this.isSortAscending = isSortAscending;
@@ -187,4 +188,25 @@ public class FTSRestRequest
   {
     this.offSet = offSet;
   }
+
+  /**
+   * locate column given field name
+   * 
+   * @param string
+   *          - field name
+   * @return -1 if not located
+   */
+  public int getFieldIndex(String string)
+  {
+    int i = associatedSequence != null ? 1 : 0;
+    for (FTSDataColumnI field : wantedFields)
+    {
+      if (field.getName().equals(string))
+      {
+        return i;
+      }
+      i++;
+    }
+    return -1;
+  }
 }