X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Ffts%2Fcore%2FGFTSPanel.java;h=232561c4c54da68287e5275490eae9789ae30547;hb=f4e415106d75a69a373c0c9a37b6bdc2d5a55231;hp=1c799aa1bd63037bfbc5e19cd79b7dbbbc163c7b;hpb=5585b4b0ed1f5dd85887ed6b76352947ce1be133;p=jalview.git diff --git a/src/jalview/fts/core/GFTSPanel.java b/src/jalview/fts/core/GFTSPanel.java index 1c799aa..232561c 100644 --- a/src/jalview/fts/core/GFTSPanel.java +++ b/src/jalview/fts/core/GFTSPanel.java @@ -28,28 +28,36 @@ import jalview.gui.Desktop; import jalview.gui.IProgressIndicator; import jalview.gui.JvSwingUtils; import jalview.gui.SequenceFetcher; +import jalview.io.cache.JvCacheableInputBox; import jalview.util.MessageManager; import java.awt.BorderLayout; import java.awt.CardLayout; import java.awt.Dimension; +import java.awt.Font; import java.awt.event.ActionEvent; import java.awt.event.ActionListener; +import java.awt.event.FocusAdapter; import java.awt.event.FocusEvent; import java.awt.event.FocusListener; +import java.awt.event.ItemEvent; +import java.awt.event.ItemListener; import java.awt.event.KeyAdapter; import java.awt.event.KeyEvent; import java.awt.event.MouseAdapter; import java.awt.event.MouseEvent; +import java.text.DecimalFormat; import java.util.ArrayList; import java.util.Arrays; import java.util.Collection; import java.util.Collections; import java.util.Comparator; +import java.util.HashSet; import java.util.List; import javax.swing.ImageIcon; import javax.swing.JButton; +import javax.swing.JCheckBox; import javax.swing.JComboBox; import javax.swing.JFrame; import javax.swing.JInternalFrame; @@ -58,14 +66,15 @@ import javax.swing.JPanel; import javax.swing.JScrollPane; import javax.swing.JTabbedPane; import javax.swing.JTable; -import javax.swing.JTextField; import javax.swing.Timer; import javax.swing.event.ChangeEvent; import javax.swing.event.ChangeListener; import javax.swing.event.DocumentEvent; import javax.swing.event.DocumentListener; +import javax.swing.event.InternalFrameEvent; import javax.swing.table.DefaultTableModel; import javax.swing.table.TableColumn; +import javax.swing.text.JTextComponent; /** * This class provides the swing GUI layout for FTS Panel and implements most of @@ -78,12 +87,15 @@ import javax.swing.table.TableColumn; @SuppressWarnings("serial") public abstract class GFTSPanel extends JPanel implements GFTSPanelI { + private static final Font VERDANA_12 = new Font("Verdana", 0, 12); + protected JInternalFrame mainFrame = new JInternalFrame( getFTSFrameTitle()); - protected IProgressIndicator progressIdicator; + protected JTabbedPane tabs = new JTabbedPane(); + protected IProgressIndicator progressIndicator; - protected JComboBox cmb_searchTarget = new JComboBox(); + protected JComboBox cmb_searchTarget = new JComboBox<>(); protected JButton btn_ok = new JButton(); @@ -91,7 +103,9 @@ public abstract class GFTSPanel extends JPanel implements GFTSPanelI protected JButton btn_cancel = new JButton(); - protected JTextField txt_search = new JTextField(30); + protected JCheckBox btn_autosearch = new JCheckBox(); + + protected JvCacheableInputBox txt_search; protected SequenceFetcher seqFetcher; @@ -105,14 +119,14 @@ public abstract class GFTSPanel extends JPanel implements GFTSPanelI protected StringBuilder errorWarning = new StringBuilder(); - protected ImageIcon warningImage = new ImageIcon(getClass().getResource( - "/images/warning.gif")); + protected ImageIcon warningImage = new ImageIcon( + getClass().getResource("/images/warning.gif")); - protected ImageIcon loadingImage = new ImageIcon(getClass().getResource( - "/images/loading.gif")); + protected ImageIcon loadingImage = new ImageIcon( + getClass().getResource("/images/loading.gif")); - protected ImageIcon balnkPlaceholderImage = new ImageIcon(getClass() - .getResource("/images/blank_16x16_placeholder.png")); + protected ImageIcon balnkPlaceholderImage = new ImageIcon( + getClass().getResource("/images/blank_16x16_placeholder.png")); protected JLabel lbl_warning = new JLabel(warningImage); @@ -140,6 +154,15 @@ public abstract class GFTSPanel extends JPanel implements GFTSPanelI protected int pageLimit; + protected HashSet paginatorCart = new HashSet<>(); + + private static final int MIN_WIDTH = 670; + + private static final int MIN_HEIGHT = 300; + + protected static final DecimalFormat totalNumberformatter = new DecimalFormat( + "###,###"); + private JTable tbl_summary = new JTable() { private boolean inLayout; @@ -183,6 +206,8 @@ public abstract class GFTSPanel extends JPanel implements GFTSPanelI && !inLayout) { resizingColumn.setPreferredWidth(resizingColumn.getWidth()); + String colHeader = resizingColumn.getHeaderValue().toString(); + getTempUserPrefs().put(colHeader, resizingColumn.getWidth()); } resizeAndRepaint(); } @@ -208,20 +233,53 @@ public abstract class GFTSPanel extends JPanel implements GFTSPanelI e.printStackTrace(); } toolTipText = (toolTipText == null ? null - : (toolTipText.length() > 500 ? JvSwingUtils.wrapTooltip( - true, toolTipText.subSequence(0, 500) + "...") + : (toolTipText.length() > 500 + ? JvSwingUtils.wrapTooltip(true, + toolTipText.subSequence(0, 500) + "...") : JvSwingUtils.wrapTooltip(true, toolTipText))); return toolTipText; } }; + protected JScrollPane scrl_searchResult = new JScrollPane(tbl_summary); public GFTSPanel() { + this(null); + } + + public GFTSPanel(SequenceFetcher fetcher) + { try { + if (fetcher == null) + { + tabs = null; + } jbInit(); + if (fetcher != null) + { + tabs.addTab(MessageManager.getString("label.retrieve_ids"), + fetcher); + fetcher.setDatabaseChooserVisible(false); + fetcher.embedWithFTSPanel(this); + } + mainFrame.setMinimumSize(new Dimension(MIN_WIDTH, MIN_HEIGHT)); + final JPanel ftsPanel = this; + mainFrame.addFocusListener(new FocusAdapter() + { + @Override + public void focusGained(FocusEvent e) + { + // TODO: make selected tab gain focus in correct widget + if (tabs != null + && tabs.getSelectedComponent() == ftsPanel) + { + txt_search.requestFocusInWindow(); + } + } + }); mainFrame.invalidate(); mainFrame.pack(); } catch (Exception e) @@ -237,12 +295,19 @@ public abstract class GFTSPanel extends JPanel implements GFTSPanelI */ private void jbInit() throws Exception { + + txt_search = new JvCacheableInputBox<>(getCacheKey()); + populateCmbSearchTargetOptions(); + Integer width = getTempUserPrefs().get("FTSPanel.width") == null ? 800 + : getTempUserPrefs().get("FTSPanel.width"); + Integer height = getTempUserPrefs().get("FTSPanel.height") == null ? 400 + : getTempUserPrefs().get("FTSPanel.height"); lbl_warning.setVisible(false); - lbl_warning.setFont(new java.awt.Font("Verdana", 0, 12)); + lbl_warning.setFont(VERDANA_12); lbl_loading.setVisible(false); - lbl_loading.setFont(new java.awt.Font("Verdana", 0, 12)); + lbl_loading.setFont(VERDANA_12); lbl_blank.setVisible(true); - lbl_blank.setFont(new java.awt.Font("Verdana", 0, 12)); + lbl_blank.setFont(VERDANA_12); tbl_summary.setAutoCreateRowSorter(true); tbl_summary.getTableHeader().setReorderingAllowed(false); @@ -295,7 +360,34 @@ public abstract class GFTSPanel extends JPanel implements GFTSPanelI } }); - btn_back.setFont(new java.awt.Font("Verdana", 0, 12)); + JButton txt_help = new JButton("?"); + txt_help.setFont(VERDANA_12); + txt_help.setPreferredSize(new Dimension(15, 15)); + txt_help.setToolTipText(MessageManager.getString("action.help")); + txt_help.addActionListener(new ActionListener() + { + @Override + public void actionPerformed(ActionEvent e) + { + showHelp(); + } + }); + + btn_autosearch.setText(MessageManager.getString("option.autosearch")); + btn_autosearch.setToolTipText( + MessageManager.getString("option.enable_disable_autosearch")); + btn_autosearch.setSelected( + jalview.bin.Cache.getDefault(getAutosearchPreference(), true)); + btn_autosearch.addActionListener(new java.awt.event.ActionListener() + { + @Override + public void actionPerformed(ActionEvent e) + { + jalview.bin.Cache.setProperty(getAutosearchPreference(), + Boolean.toString(btn_autosearch.isSelected())); + } + }); + btn_back.setFont(VERDANA_12); btn_back.setText(MessageManager.getString("action.back")); btn_back.addActionListener(new java.awt.event.ActionListener() { @@ -318,7 +410,7 @@ public abstract class GFTSPanel extends JPanel implements GFTSPanelI }); btn_ok.setEnabled(false); - btn_ok.setFont(new java.awt.Font("Verdana", 0, 12)); + btn_ok.setFont(VERDANA_12); btn_ok.setText(MessageManager.getString("action.ok")); btn_ok.addActionListener(new java.awt.event.ActionListener() { @@ -339,11 +431,10 @@ public abstract class GFTSPanel extends JPanel implements GFTSPanelI } } }); - btn_next_page.setEnabled(false); - btn_next_page.setToolTipText(MessageManager - .getString("label.next_page_tooltop")); - btn_next_page.setFont(new java.awt.Font("Verdana", 0, 12)); + btn_next_page.setToolTipText( + MessageManager.getString("label.next_page_tooltip")); + btn_next_page.setFont(VERDANA_12); btn_next_page.setText(MessageManager.getString("action.next_page")); btn_next_page.addActionListener(new java.awt.event.ActionListener() { @@ -366,9 +457,9 @@ public abstract class GFTSPanel extends JPanel implements GFTSPanelI }); btn_prev_page.setEnabled(false); - btn_prev_page.setToolTipText(MessageManager - .getString("label.prev_page_tooltop")); - btn_prev_page.setFont(new java.awt.Font("Verdana", 0, 12)); + btn_prev_page.setToolTipText( + MessageManager.getString("label.prev_page_tooltip")); + btn_prev_page.setFont(VERDANA_12); btn_prev_page.setText(MessageManager.getString("action.prev_page")); btn_prev_page.addActionListener(new java.awt.event.ActionListener() { @@ -401,7 +492,7 @@ public abstract class GFTSPanel extends JPanel implements GFTSPanelI btn_next_page.setVisible(false); } - btn_cancel.setFont(new java.awt.Font("Verdana", 0, 12)); + btn_cancel.setFont(VERDANA_12); btn_cancel.setText(MessageManager.getString("action.cancel")); btn_cancel.addActionListener(new java.awt.event.ActionListener() { @@ -422,81 +513,87 @@ public abstract class GFTSPanel extends JPanel implements GFTSPanelI } } }); - scrl_searchResult.setPreferredSize(new Dimension(800, 400)); - - cmb_searchTarget.setFont(new java.awt.Font("Verdana", 0, 12)); - cmb_searchTarget.addActionListener(new ActionListener() - { - @Override - public void actionPerformed(ActionEvent e) - { - String tooltipText; - if ("all".equalsIgnoreCase(getCmbSearchTarget().getSelectedItem() - .toString())) - { - tooltipText = MessageManager.getString("label.search_all"); - } - else if ("pdb id".equalsIgnoreCase(getCmbSearchTarget() - .getSelectedItem().toString())) - { - tooltipText = MessageManager - .getString("label.separate_multiple_accession_ids"); - } - else - { - tooltipText = MessageManager.formatMessage( - "label.separate_multiple_query_values", - new Object[] { getCmbSearchTarget().getSelectedItem() - .toString() }); - } - txt_search.setToolTipText(JvSwingUtils.wrapTooltip(true, - tooltipText)); - searchAction(true); - } - }); + scrl_searchResult.setPreferredSize(new Dimension(width, height)); - populateCmbSearchTargetOptions(); - - txt_search.setFont(new java.awt.Font("Verdana", 0, 12)); - - txt_search.addKeyListener(new KeyAdapter() + cmb_searchTarget.setFont(VERDANA_12); + cmb_searchTarget.addItemListener(new ItemListener() { @Override - public void keyPressed(KeyEvent e) + public void itemStateChanged(ItemEvent e) { - if (e.getKeyCode() == KeyEvent.VK_ENTER) + if (e.getStateChange() == ItemEvent.SELECTED) { - if (txt_search.getText() == null - || txt_search.getText().isEmpty()) + String tooltipText; + if ("all".equalsIgnoreCase( + getCmbSearchTarget().getSelectedItem().toString())) + { + tooltipText = MessageManager.getString("label.search_all"); + } + else if ("pdb id".equalsIgnoreCase( + getCmbSearchTarget().getSelectedItem().toString())) { - return; + tooltipText = MessageManager + .getString("label.separate_multiple_accession_ids"); } - String primaryKeyName = getFTSRestClient().getPrimaryKeyColumn() - .getName(); - if (primaryKeyName.equalsIgnoreCase(getCmbSearchTarget() - .getSelectedItem().toString())) + else { - transferToSequenceFetcher(txt_search.getText()); + tooltipText = MessageManager.formatMessage( + "label.separate_multiple_query_values", new Object[] + { getCmbSearchTarget().getSelectedItem().toString() }); } + txt_search.setToolTipText( + JvSwingUtils.wrapTooltip(true, tooltipText)); + searchAction(true); } } }); + txt_search.setFont(VERDANA_12); + + txt_search.getEditor().getEditorComponent() + .addKeyListener(new KeyAdapter() + { + @Override + public void keyPressed(KeyEvent e) + { + if (e.getKeyCode() == KeyEvent.VK_ENTER) + { + if (getTypedText() == null || getTypedText().isEmpty()) + { + return; + } + String primaryKeyName = getFTSRestClient() + .getPrimaryKeyColumn().getName(); + if (primaryKeyName.equalsIgnoreCase(getCmbSearchTarget() + .getSelectedItem().toString())) + { + // TODO: nicer to show the list in the result set before + // viewing in Jalview perhaps ? + transferToSequenceFetcher(getTypedText()); + } + else + { + performSearchAction(); + } + } + } + }); final DeferredTextInputListener listener = new DeferredTextInputListener( - 1500, - new ActionListener() + 1500, new ActionListener() { @Override public void actionPerformed(ActionEvent e) { - if (!getTypedText().equalsIgnoreCase(lastSearchTerm)) + if (btn_autosearch.isSelected() + || txt_search.wasEnterPressed()) { - searchAction(true); - lastSearchTerm = getTypedText(); + performSearchAction(); } } }, false); - txt_search.getDocument().addDocumentListener(listener); + ((JTextComponent) txt_search.getEditor().getEditorComponent()) + .getDocument().addDocumentListener(listener); + txt_search.addFocusListener(new FocusListener() { @Override @@ -508,10 +605,19 @@ public abstract class GFTSPanel extends JPanel implements GFTSPanelI @Override public void focusLost(FocusEvent e) { -// listener.stop(); + // listener.stop(); } }); + txt_search.addActionListener(new ActionListener() + { + + @Override + public void actionPerformed(ActionEvent e) + { + performSearchAction(); + } + }); final String searchTabTitle = MessageManager .getString("label.search_result"); final String configureCols = MessageManager @@ -541,7 +647,7 @@ public abstract class GFTSPanel extends JPanel implements GFTSPanelI txt_search.setEnabled(false); cmb_searchTarget.setEnabled(false); previousWantedFields = getFTSRestClient() - .getAllDefaulDisplayedDataColumns() + .getAllDefaultDisplayedFTSDataColumns() .toArray(new Object[0]); } if (sourceTabbedPane.getTitleAt(index).equals(searchTabTitle)) @@ -554,6 +660,7 @@ public abstract class GFTSPanel extends JPanel implements GFTSPanelI if (wantedFieldsUpdated()) { searchAction(true); + paginatorCart.clear(); } else { @@ -563,7 +670,7 @@ public abstract class GFTSPanel extends JPanel implements GFTSPanelI } }; tabbedPane.addChangeListener(changeListener); - tabbedPane.setPreferredSize(new Dimension(800, 400)); + tabbedPane.setPreferredSize(new Dimension(width, height)); tabbedPane.add(searchTabTitle, scrl_searchResult); tabbedPane.add(configureCols, new FTSDataColumnPreferences( PreferenceSource.SEARCH_SUMMARY, getFTSRestClient())); @@ -575,6 +682,8 @@ public abstract class GFTSPanel extends JPanel implements GFTSPanelI pnl_results.add(tabbedPane); pnl_inputs.add(cmb_searchTarget); pnl_inputs.add(txt_search); + pnl_inputs.add(txt_help); + pnl_inputs.add(btn_autosearch); pnl_inputs.add(lbl_loading); pnl_inputs.add(lbl_warning); pnl_inputs.add(lbl_blank); @@ -586,9 +695,48 @@ public abstract class GFTSPanel extends JPanel implements GFTSPanelI this.add(pnl_results, java.awt.BorderLayout.CENTER); this.add(pnl_actions, java.awt.BorderLayout.SOUTH); mainFrame.setVisible(true); - mainFrame.setContentPane(this); + if (tabs != null) + { + tabs.setOpaque(true); + tabs.insertTab(MessageManager.getString("label.free_text_search"), + null, this, "", 0); + mainFrame.setContentPane(tabs); + tabs.setVisible(true); + } + else + { + mainFrame.setContentPane(this); + } + mainFrame.setDefaultCloseOperation(JFrame.DISPOSE_ON_CLOSE); + mainFrame.addInternalFrameListener( + new javax.swing.event.InternalFrameAdapter() + { + @Override + public void internalFrameClosing(InternalFrameEvent e) + { + closeAction(); + } + }); mainFrame.setDefaultCloseOperation(JFrame.DISPOSE_ON_CLOSE); - Desktop.addInternalFrame(mainFrame, getFTSFrameTitle(), 900, 500); + Integer x = getTempUserPrefs().get("FTSPanel.x"); + Integer y = getTempUserPrefs().get("FTSPanel.y"); + if (x != null && y != null) + { + mainFrame.setLocation(x, y); + } + Desktop.addInternalFrame(mainFrame, getFTSFrameTitle(), width, height); + } + + abstract protected void showHelp(); + + protected void closeAction() + { + getTempUserPrefs().put("FTSPanel.width", this.getWidth()); + getTempUserPrefs().put("FTSPanel.height", pnl_results.getHeight()); + getTempUserPrefs().put("FTSPanel.x", mainFrame.getX()); + getTempUserPrefs().put("FTSPanel.y", mainFrame.getY()); + mainFrame.dispose(); + txt_search.persistCache(); } public class DeferredTextInputListener implements DocumentListener @@ -632,23 +780,35 @@ public abstract class GFTSPanel extends JPanel implements GFTSPanelI } + void performSearchAction() + { + String typed = getTypedText(); + if (typed != null && typed.length() > 0 + && !typed.equalsIgnoreCase(lastSearchTerm)) + { + searchAction(true); + paginatorCart.clear(); + lastSearchTerm = typed; + } + } + public boolean wantedFieldsUpdated() { if (previousWantedFields == null) { - return true; + return false; } return Arrays.equals(getFTSRestClient() - .getAllDefaulDisplayedDataColumns() - .toArray(new Object[0]), previousWantedFields) ? false - : true; + .getAllDefaultDisplayedFTSDataColumns().toArray(new Object[0]), + previousWantedFields) ? false : true; } public void validateSelection() { - if (tbl_summary.getSelectedRows().length > 0) + if (tbl_summary.getSelectedRows().length > 0 + || !paginatorCart.isEmpty()) { btn_ok.setEnabled(true); } @@ -663,7 +823,7 @@ public abstract class GFTSPanel extends JPanel implements GFTSPanelI return cmb_searchTarget; } - public JTextField getTxtSearch() + public JComboBox getTxtSearch() { return txt_search; } @@ -702,16 +862,16 @@ public abstract class GFTSPanel extends JPanel implements GFTSPanelI { lbl_loading.setVisible(false); lbl_blank.setVisible(false); - lbl_warning.setToolTipText(JvSwingUtils.wrapTooltip(true, - errorWarning.toString())); + lbl_warning.setToolTipText( + JvSwingUtils.wrapTooltip(true, errorWarning.toString())); lbl_warning.setVisible(true); } } - protected void btn_back_ActionPerformed() + public void btn_back_ActionPerformed() { - mainFrame.dispose(); - new SequenceFetcher(progressIdicator); + closeAction(); + new SequenceFetcher(progressIndicator); } protected void disableActionButtons() @@ -721,9 +881,9 @@ public abstract class GFTSPanel extends JPanel implements GFTSPanelI btn_cancel.setEnabled(false); } - protected void btn_cancel_ActionPerformed() + public void btn_cancel_ActionPerformed() { - mainFrame.dispose(); + closeAction(); } /** @@ -731,7 +891,7 @@ public abstract class GFTSPanel extends JPanel implements GFTSPanelI */ public void populateCmbSearchTargetOptions() { - List searchableTargets = new ArrayList(); + List searchableTargets = new ArrayList<>(); try { Collection foundFTSTargets = getFTSRestClient() @@ -757,10 +917,8 @@ public abstract class GFTSPanel extends JPanel implements GFTSPanelI } } - public void transferToSequenceFetcher(String ids) { - // mainFrame.dispose(); seqFetcher.getTextArea().setText(ids); Thread worker = new Thread(seqFetcher); worker.start(); @@ -769,7 +927,7 @@ public abstract class GFTSPanel extends JPanel implements GFTSPanelI @Override public String getTypedText() { - return txt_search.getText().trim(); + return txt_search.getUserInput(); } @Override @@ -820,11 +978,13 @@ public abstract class GFTSPanel extends JPanel implements GFTSPanelI { lbl_blank.setVisible(!isSearchInProgress); lbl_loading.setVisible(isSearchInProgress); + txt_search.setEditable(!isSearchInProgress); } @Override public void prevPageAction() { + updatePaginatorCart(); if (offSet >= pageLimit) { offSet = offSet - pageLimit; @@ -839,18 +999,78 @@ public abstract class GFTSPanel extends JPanel implements GFTSPanelI @Override public void nextPageAction() { + updatePaginatorCart(); offSet = offSet + pageLimit; searchAction(false); + } + public void updatePaginatorCart() + { + int primaryKeyColIndex = 0; + JTable resultTable = getResultTable(); + int totalRows = resultTable.getRowCount(); + try + { + primaryKeyColIndex = getFTSRestClient() + .getPrimaryKeyColumIndex(wantedFields, false); + } catch (Exception e) + { + e.printStackTrace(); + } + + for (int row = 0; row < totalRows; row++) + { + String id = (String) resultTable.getValueAt(row, primaryKeyColIndex); + if (paginatorCart.contains(id)) + { + paginatorCart.remove(id); + } + } + int[] selectedRows = resultTable.getSelectedRows(); + for (int summaryRow : selectedRows) + { + String idStr = resultTable.getValueAt(summaryRow, primaryKeyColIndex) + .toString(); + paginatorCart.add(idStr); + } + } + + public void updateSummaryTableSelections() + { + JTable resultTable = getResultTable(); + if (paginatorCart.isEmpty()) + { + return; + } + int primaryKeyColIndex = 0; + try + { + primaryKeyColIndex = getFTSRestClient() + .getPrimaryKeyColumIndex(wantedFields, false); + } catch (Exception e) + { + e.printStackTrace(); + } + int totalRows = resultTable.getRowCount(); + for (int row = 0; row < totalRows; row++) + { + String id = (String) resultTable.getValueAt(row, primaryKeyColIndex); + if (paginatorCart.contains(id)) + { + resultTable.addRowSelectionInterval(row, row); + } + } + validateSelection(); } public void refreshPaginatorState() { - // System.out.println("resultSet count : " + resultSetCount); - // System.out.println("offSet : " + offSet); - // System.out.println("page limit : " + pageLimit); setPrevPageButtonEnabled(false); setNextPageButtonEnabled(false); + if (resultSetCount == 0 && pageLimit == 0) + { + return; + } if (resultSetCount >= pageLimit) { setNextPageButtonEnabled(true); @@ -860,6 +1080,7 @@ public abstract class GFTSPanel extends JPanel implements GFTSPanelI setPrevPageButtonEnabled(true); } } + public void referesh() { mainFrame.setTitle(getFTSFrameTitle());