X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Ffts%2Fcore%2FGFTSPanel.java;h=3fdac2a343377c4d73a57ad8ffc112bdfe77e39a;hb=dc1488c10064504e3919e8b6b24218cc032e3ba3;hp=02a313b7cb9f0b2a8ea3ae81f0ed4ca1e37dc1d9;hpb=a3499f1eaaef8cc03aac19a28f960acd0fd70a04;p=jalview.git diff --git a/src/jalview/fts/core/GFTSPanel.java b/src/jalview/fts/core/GFTSPanel.java index 02a313b..3fdac2a 100644 --- a/src/jalview/fts/core/GFTSPanel.java +++ b/src/jalview/fts/core/GFTSPanel.java @@ -28,6 +28,7 @@ import jalview.gui.Desktop; import jalview.gui.IProgressIndicator; import jalview.gui.JvSwingUtils; import jalview.gui.SequenceFetcher; +import jalview.io.cache.JvCacheableInputBox; import jalview.util.MessageManager; import java.awt.BorderLayout; @@ -35,21 +36,27 @@ import java.awt.CardLayout; import java.awt.Dimension; import java.awt.event.ActionEvent; import java.awt.event.ActionListener; +import java.awt.event.FocusAdapter; import java.awt.event.FocusEvent; import java.awt.event.FocusListener; +import java.awt.event.ItemEvent; +import java.awt.event.ItemListener; import java.awt.event.KeyAdapter; import java.awt.event.KeyEvent; import java.awt.event.MouseAdapter; import java.awt.event.MouseEvent; +import java.text.DecimalFormat; import java.util.ArrayList; import java.util.Arrays; import java.util.Collection; import java.util.Collections; import java.util.Comparator; +import java.util.HashSet; import java.util.List; import javax.swing.ImageIcon; import javax.swing.JButton; +import javax.swing.JCheckBox; import javax.swing.JComboBox; import javax.swing.JFrame; import javax.swing.JInternalFrame; @@ -58,14 +65,15 @@ import javax.swing.JPanel; import javax.swing.JScrollPane; import javax.swing.JTabbedPane; import javax.swing.JTable; -import javax.swing.JTextField; import javax.swing.Timer; import javax.swing.event.ChangeEvent; import javax.swing.event.ChangeListener; import javax.swing.event.DocumentEvent; import javax.swing.event.DocumentListener; +import javax.swing.event.InternalFrameEvent; import javax.swing.table.DefaultTableModel; import javax.swing.table.TableColumn; +import javax.swing.text.JTextComponent; /** * This class provides the swing GUI layout for FTS Panel and implements most of @@ -81,7 +89,8 @@ public abstract class GFTSPanel extends JPanel implements GFTSPanelI protected JInternalFrame mainFrame = new JInternalFrame( getFTSFrameTitle()); - protected IProgressIndicator progressIdicator; + protected JTabbedPane mainFramTabs = new JTabbedPane(); + protected IProgressIndicator progressIndicator; protected JComboBox cmb_searchTarget = new JComboBox(); @@ -91,7 +100,9 @@ public abstract class GFTSPanel extends JPanel implements GFTSPanelI protected JButton btn_cancel = new JButton(); - protected JTextField txt_search = new JTextField(35); + protected JCheckBox btn_autosearch = new JCheckBox(); + + protected JvCacheableInputBox txt_search; protected SequenceFetcher seqFetcher; @@ -103,6 +114,52 @@ public abstract class GFTSPanel extends JPanel implements GFTSPanelI protected JButton btn_prev_page = new JButton(); + protected StringBuilder errorWarning = new StringBuilder(); + + protected ImageIcon warningImage = new ImageIcon( + getClass().getResource("/images/warning.gif")); + + protected ImageIcon loadingImage = new ImageIcon( + getClass().getResource("/images/loading.gif")); + + protected ImageIcon balnkPlaceholderImage = new ImageIcon( + getClass().getResource("/images/blank_16x16_placeholder.png")); + + protected JLabel lbl_warning = new JLabel(warningImage); + + protected JLabel lbl_loading = new JLabel(loadingImage); + + protected JLabel lbl_blank = new JLabel(balnkPlaceholderImage); + + private JTabbedPane tabbedPane = new JTabbedPane(); + + private JPanel pnl_actions = new JPanel(); + + private JPanel pnl_results = new JPanel(new CardLayout()); + + private JPanel pnl_inputs = new JPanel(); + + private BorderLayout mainLayout = new BorderLayout(); + + protected Object[] previousWantedFields; + + protected int resultSetCount; + + protected int totalResultSetCount; + + protected int offSet; + + protected int pageLimit; + + protected HashSet paginatorCart = new HashSet(); + + private static final int MIN_WIDTH = 670; + + private static final int MIN_HEIGHT = 300; + + protected static final DecimalFormat totalNumberformatter = new DecimalFormat( + "###,###"); + private JTable tbl_summary = new JTable() { private boolean inLayout; @@ -146,6 +203,8 @@ public abstract class GFTSPanel extends JPanel implements GFTSPanelI && !inLayout) { resizingColumn.setPreferredWidth(resizingColumn.getWidth()); + String colHeader = resizingColumn.getHeaderValue().toString(); + getTempUserPrefs().put(colHeader, resizingColumn.getWidth()); } resizeAndRepaint(); } @@ -171,45 +230,51 @@ public abstract class GFTSPanel extends JPanel implements GFTSPanelI e.printStackTrace(); } toolTipText = (toolTipText == null ? null - : (toolTipText.length() > 500 ? JvSwingUtils.wrapTooltip( - true, toolTipText.subSequence(0, 500) + "...") + : (toolTipText.length() > 500 + ? JvSwingUtils.wrapTooltip(true, + toolTipText.subSequence(0, 500) + "...") : JvSwingUtils.wrapTooltip(true, toolTipText))); return toolTipText; } }; - protected StringBuilder errorWarning = new StringBuilder(); - protected JScrollPane scrl_searchResult = new JScrollPane(tbl_summary); - protected ImageIcon warningImage = new ImageIcon(getClass().getResource( - "/images/warning.gif")); - - protected ImageIcon loadingImage = new ImageIcon(getClass().getResource( - "/images/loading.gif")); - - protected JLabel lbl_warning = new JLabel(warningImage); - - protected JLabel lbl_loading = new JLabel(loadingImage); - - private JTabbedPane tabbedPane = new JTabbedPane(); - - private JPanel pnl_actions = new JPanel(); - - private JPanel pnl_results = new JPanel(new CardLayout()); - - private JPanel pnl_inputs = new JPanel(); - - private BorderLayout mainLayout = new BorderLayout(); - - protected Object[] previousWantedFields; - public GFTSPanel() { + this(null); + } + + public GFTSPanel(SequenceFetcher fetcher) + { try { + if (fetcher == null) + { + mainFramTabs = null; + } jbInit(); + if (fetcher != null) + { + mainFramTabs.addTab("Retrieve IDs", fetcher); + fetcher.setDatabaseChooserVisible(false); + } + mainFrame.setMinimumSize(new Dimension(MIN_WIDTH, MIN_HEIGHT)); + final JPanel ftsPanel = this; + mainFrame.addFocusListener(new FocusAdapter() + { + @Override + public void focusGained(FocusEvent e) + { + // TODO: make selected tab gain focus in correct widget + if (mainFramTabs != null + && mainFramTabs.getSelectedComponent() == ftsPanel) + { + txt_search.requestFocusInWindow(); + } + } + }); mainFrame.invalidate(); mainFrame.pack(); } catch (Exception e) @@ -225,10 +290,19 @@ public abstract class GFTSPanel extends JPanel implements GFTSPanelI */ private void jbInit() throws Exception { + + txt_search = new JvCacheableInputBox(getCacheKey()); + populateCmbSearchTargetOptions(); + Integer width = getTempUserPrefs().get("FTSPanel.width") == null ? 800 + : getTempUserPrefs().get("FTSPanel.width"); + Integer height = getTempUserPrefs().get("FTSPanel.height") == null ? 400 + : getTempUserPrefs().get("FTSPanel.height"); lbl_warning.setVisible(false); lbl_warning.setFont(new java.awt.Font("Verdana", 0, 12)); lbl_loading.setVisible(false); lbl_loading.setFont(new java.awt.Font("Verdana", 0, 12)); + lbl_blank.setVisible(true); + lbl_blank.setFont(new java.awt.Font("Verdana", 0, 12)); tbl_summary.setAutoCreateRowSorter(true); tbl_summary.getTableHeader().setReorderingAllowed(false); @@ -281,6 +355,9 @@ public abstract class GFTSPanel extends JPanel implements GFTSPanelI } }); + btn_autosearch.setText(MessageManager.getString("option.autosearch")); + btn_autosearch.setToolTipText( + MessageManager.getString("option.enable_disable_autosearch")); btn_back.setFont(new java.awt.Font("Verdana", 0, 12)); btn_back.setText(MessageManager.getString("action.back")); btn_back.addActionListener(new java.awt.event.ActionListener() @@ -325,8 +402,9 @@ public abstract class GFTSPanel extends JPanel implements GFTSPanelI } } }); - btn_next_page.setEnabled(false); + btn_next_page.setToolTipText( + MessageManager.getString("label.next_page_tooltip")); btn_next_page.setFont(new java.awt.Font("Verdana", 0, 12)); btn_next_page.setText(MessageManager.getString("action.next_page")); btn_next_page.addActionListener(new java.awt.event.ActionListener() @@ -350,6 +428,8 @@ public abstract class GFTSPanel extends JPanel implements GFTSPanelI }); btn_prev_page.setEnabled(false); + btn_prev_page.setToolTipText( + MessageManager.getString("label.prev_page_tooltip")); btn_prev_page.setFont(new java.awt.Font("Verdana", 0, 12)); btn_prev_page.setText(MessageManager.getString("action.prev_page")); btn_prev_page.addActionListener(new java.awt.event.ActionListener() @@ -404,81 +484,87 @@ public abstract class GFTSPanel extends JPanel implements GFTSPanelI } } }); - scrl_searchResult.setPreferredSize(new Dimension(800, 400)); + scrl_searchResult.setPreferredSize(new Dimension(width, height)); cmb_searchTarget.setFont(new java.awt.Font("Verdana", 0, 12)); - cmb_searchTarget.addActionListener(new ActionListener() + cmb_searchTarget.addItemListener(new ItemListener() { @Override - public void actionPerformed(ActionEvent e) + public void itemStateChanged(ItemEvent e) { - String tooltipText; - if ("all".equalsIgnoreCase(getCmbSearchTarget().getSelectedItem() - .toString())) + if (e.getStateChange() == ItemEvent.SELECTED) { - tooltipText = MessageManager.getString("label.search_all"); - } - else if ("pdb id".equalsIgnoreCase(getCmbSearchTarget() - .getSelectedItem().toString())) - { - tooltipText = MessageManager - .getString("label.separate_multiple_accession_ids"); - } - else - { - tooltipText = MessageManager.formatMessage( - "label.separate_multiple_query_values", - new Object[] { getCmbSearchTarget().getSelectedItem() - .toString() }); - } - txt_search.setToolTipText(JvSwingUtils.wrapTooltip(true, - tooltipText)); - searchAction(); - } - }); - - populateCmbSearchTargetOptions(); - - txt_search.setFont(new java.awt.Font("Verdana", 0, 12)); - - txt_search.addKeyListener(new KeyAdapter() - { - @Override - public void keyPressed(KeyEvent e) - { - if (e.getKeyCode() == KeyEvent.VK_ENTER) - { - if (txt_search.getText() == null - || txt_search.getText().isEmpty()) + String tooltipText; + if ("all".equalsIgnoreCase( + getCmbSearchTarget().getSelectedItem().toString())) { - return; + tooltipText = MessageManager.getString("label.search_all"); } - String primaryKeyName = getFTSRestClient().getPrimaryKeyColumn() - .getName(); - if (primaryKeyName.equalsIgnoreCase(getCmbSearchTarget() - .getSelectedItem().toString())) + else if ("pdb id".equalsIgnoreCase( + getCmbSearchTarget().getSelectedItem().toString())) { - transferToSequenceFetcher(txt_search.getText()); + tooltipText = MessageManager + .getString("label.separate_multiple_accession_ids"); } + else + { + tooltipText = MessageManager.formatMessage( + "label.separate_multiple_query_values", new Object[] + { getCmbSearchTarget().getSelectedItem().toString() }); + } + txt_search.setToolTipText( + JvSwingUtils.wrapTooltip(true, tooltipText)); + searchAction(true); } } }); + txt_search.setFont(new java.awt.Font("Verdana", 0, 12)); + + txt_search.getEditor().getEditorComponent() + .addKeyListener(new KeyAdapter() + { + @Override + public void keyPressed(KeyEvent e) + { + if (e.getKeyCode() == KeyEvent.VK_ENTER) + { + if (getTypedText() == null || getTypedText().isEmpty()) + { + return; + } + String primaryKeyName = getFTSRestClient() + .getPrimaryKeyColumn().getName(); + if (primaryKeyName.equalsIgnoreCase(getCmbSearchTarget() + .getSelectedItem().toString())) + { + // TODO: nicer to show the list in the result set before + // viewing in Jalview perhaps ? + transferToSequenceFetcher(getTypedText()); + } + else + { + performSearchAction(); + } + } + } + }); final DeferredTextInputListener listener = new DeferredTextInputListener( - 2500, - new ActionListener() + 1500, new ActionListener() { @Override public void actionPerformed(ActionEvent e) { - if (!getTypedText().equalsIgnoreCase(lastSearchTerm)) + if (btn_autosearch.isSelected() + || txt_search.wasEnterPressed()) { - searchAction(); - lastSearchTerm = getTypedText(); + performSearchAction(); } } }, false); - txt_search.getDocument().addDocumentListener(listener); + ((JTextComponent) txt_search.getEditor().getEditorComponent()) + .getDocument().addDocumentListener(listener); + txt_search.addFocusListener(new FocusListener() { @Override @@ -490,10 +576,19 @@ public abstract class GFTSPanel extends JPanel implements GFTSPanelI @Override public void focusLost(FocusEvent e) { - listener.stop(); + // listener.stop(); } }); + txt_search.addActionListener(new ActionListener() + { + + @Override + public void actionPerformed(ActionEvent e) + { + performSearchAction(); + } + }); final String searchTabTitle = MessageManager .getString("label.search_result"); final String configureCols = MessageManager @@ -518,17 +613,25 @@ public abstract class GFTSPanel extends JPanel implements GFTSPanelI btn_back.setEnabled(false); btn_cancel.setEnabled(false); btn_ok.setEnabled(false); + btn_next_page.setEnabled(false); + btn_prev_page.setEnabled(false); + txt_search.setEnabled(false); + cmb_searchTarget.setEnabled(false); previousWantedFields = getFTSRestClient() - .getAllDefaulDisplayedDataColumns() + .getAllDefaultDisplayedFTSDataColumns() .toArray(new Object[0]); } if (sourceTabbedPane.getTitleAt(index).equals(searchTabTitle)) { btn_back.setEnabled(true); btn_cancel.setEnabled(true); + refreshPaginatorState(); + txt_search.setEnabled(true); + cmb_searchTarget.setEnabled(true); if (wantedFieldsUpdated()) { - searchAction(); + searchAction(true); + paginatorCart.clear(); } else { @@ -538,7 +641,7 @@ public abstract class GFTSPanel extends JPanel implements GFTSPanelI } }; tabbedPane.addChangeListener(changeListener); - tabbedPane.setPreferredSize(new Dimension(800, 400)); + tabbedPane.setPreferredSize(new Dimension(width, height)); tabbedPane.add(searchTabTitle, scrl_searchResult); tabbedPane.add(configureCols, new FTSDataColumnPreferences( PreferenceSource.SEARCH_SUMMARY, getFTSRestClient())); @@ -550,8 +653,10 @@ public abstract class GFTSPanel extends JPanel implements GFTSPanelI pnl_results.add(tabbedPane); pnl_inputs.add(cmb_searchTarget); pnl_inputs.add(txt_search); + pnl_inputs.add(btn_autosearch); pnl_inputs.add(lbl_loading); pnl_inputs.add(lbl_warning); + pnl_inputs.add(lbl_blank); pnl_inputs.add(btn_prev_page); pnl_inputs.add(btn_next_page); @@ -560,9 +665,45 @@ public abstract class GFTSPanel extends JPanel implements GFTSPanelI this.add(pnl_results, java.awt.BorderLayout.CENTER); this.add(pnl_actions, java.awt.BorderLayout.SOUTH); mainFrame.setVisible(true); - mainFrame.setContentPane(this); + if (mainFramTabs != null) + { + mainFramTabs.setOpaque(true); + mainFramTabs.insertTab("Free Text Search", null, this, "", 0); + mainFrame.setContentPane(mainFramTabs); + mainFramTabs.setVisible(true); + } + else + { + mainFrame.setContentPane(this); + } mainFrame.setDefaultCloseOperation(JFrame.DISPOSE_ON_CLOSE); - Desktop.addInternalFrame(mainFrame, getFTSFrameTitle(), 900, 500); + mainFrame.addInternalFrameListener( + new javax.swing.event.InternalFrameAdapter() + { + @Override + public void internalFrameClosing(InternalFrameEvent e) + { + closeAction(); + } + }); + mainFrame.setDefaultCloseOperation(JFrame.DISPOSE_ON_CLOSE); + Integer x = getTempUserPrefs().get("FTSPanel.x"); + Integer y = getTempUserPrefs().get("FTSPanel.y"); + if (x != null && y != null) + { + mainFrame.setLocation(x, y); + } + Desktop.addInternalFrame(mainFrame, getFTSFrameTitle(), width, height); + } + + protected void closeAction() + { + getTempUserPrefs().put("FTSPanel.width", this.getWidth()); + getTempUserPrefs().put("FTSPanel.height", pnl_results.getHeight()); + getTempUserPrefs().put("FTSPanel.x", mainFrame.getX()); + getTempUserPrefs().put("FTSPanel.y", mainFrame.getY()); + mainFrame.dispose(); + txt_search.persistCache(); } public class DeferredTextInputListener implements DocumentListener @@ -606,23 +747,35 @@ public abstract class GFTSPanel extends JPanel implements GFTSPanelI } + void performSearchAction() + { + String typed = getTypedText(); + if (typed != null && typed.length() > 0 + && !typed.equalsIgnoreCase(lastSearchTerm)) + { + searchAction(true); + paginatorCart.clear(); + lastSearchTerm = typed; + } + } + public boolean wantedFieldsUpdated() { if (previousWantedFields == null) { - return true; + return false; } return Arrays.equals(getFTSRestClient() - .getAllDefaulDisplayedDataColumns() - .toArray(new Object[0]), previousWantedFields) ? false - : true; + .getAllDefaultDisplayedFTSDataColumns().toArray(new Object[0]), + previousWantedFields) ? false : true; } public void validateSelection() { - if (tbl_summary.getSelectedRows().length > 0) + if (tbl_summary.getSelectedRows().length > 0 + || !paginatorCart.isEmpty()) { btn_ok.setEnabled(true); } @@ -637,7 +790,7 @@ public abstract class GFTSPanel extends JPanel implements GFTSPanelI return cmb_searchTarget; } - public JTextField getTxtSearch() + public JComboBox getTxtSearch() { return txt_search; } @@ -671,19 +824,21 @@ public abstract class GFTSPanel extends JPanel implements GFTSPanelI protected void checkForErrors() { lbl_warning.setVisible(false); + lbl_blank.setVisible(true); if (errorWarning.length() > 0) { lbl_loading.setVisible(false); - lbl_warning.setToolTipText(JvSwingUtils.wrapTooltip(true, - errorWarning.toString())); + lbl_blank.setVisible(false); + lbl_warning.setToolTipText( + JvSwingUtils.wrapTooltip(true, errorWarning.toString())); lbl_warning.setVisible(true); } } protected void btn_back_ActionPerformed() { - mainFrame.dispose(); - new SequenceFetcher(progressIdicator); + closeAction(); + new SequenceFetcher(progressIndicator); } protected void disableActionButtons() @@ -695,7 +850,7 @@ public abstract class GFTSPanel extends JPanel implements GFTSPanelI protected void btn_cancel_ActionPerformed() { - mainFrame.dispose(); + closeAction(); } /** @@ -729,10 +884,8 @@ public abstract class GFTSPanel extends JPanel implements GFTSPanelI } } - public void transferToSequenceFetcher(String ids) { - // mainFrame.dispose(); seqFetcher.getTextArea().setText(ids); Thread worker = new Thread(seqFetcher); worker.start(); @@ -741,7 +894,7 @@ public abstract class GFTSPanel extends JPanel implements GFTSPanelI @Override public String getTypedText() { - return txt_search.getText().trim(); + return txt_search.getUserInput(); } @Override @@ -755,6 +908,7 @@ public abstract class GFTSPanel extends JPanel implements GFTSPanelI lbl_loading.setVisible(false); errorWarning.setLength(0); lbl_warning.setVisible(false); + lbl_blank.setVisible(true); btn_ok.setEnabled(false); mainFrame.setTitle(getFTSFrameTitle()); referesh(); @@ -789,8 +943,111 @@ public abstract class GFTSPanel extends JPanel implements GFTSPanelI @Override public void setSearchInProgress(Boolean isSearchInProgress) { + lbl_blank.setVisible(!isSearchInProgress); lbl_loading.setVisible(isSearchInProgress); + txt_search.setEditable(!isSearchInProgress); + } + + @Override + public void prevPageAction() + { + updatePaginatorCart(); + if (offSet >= pageLimit) + { + offSet = offSet - pageLimit; + searchAction(false); + } + else + { + refreshPaginatorState(); + } } + + @Override + public void nextPageAction() + { + updatePaginatorCart(); + offSet = offSet + pageLimit; + searchAction(false); + } + + public void updatePaginatorCart() + { + int primaryKeyColIndex = 0; + JTable resultTable = getResultTable(); + int totalRows = resultTable.getRowCount(); + try + { + primaryKeyColIndex = getFTSRestClient() + .getPrimaryKeyColumIndex(wantedFields, false); + } catch (Exception e) + { + e.printStackTrace(); + } + + for (int row = 0; row < totalRows; row++) + { + String id = (String) resultTable.getValueAt(row, primaryKeyColIndex); + if (paginatorCart.contains(id)) + { + paginatorCart.remove(id); + } + } + int[] selectedRows = resultTable.getSelectedRows(); + for (int summaryRow : selectedRows) + { + String idStr = resultTable.getValueAt(summaryRow, primaryKeyColIndex) + .toString(); + paginatorCart.add(idStr); + } + } + + public void updateSummaryTableSelections() + { + JTable resultTable = getResultTable(); + if (paginatorCart.isEmpty()) + { + return; + } + int primaryKeyColIndex = 0; + try + { + primaryKeyColIndex = getFTSRestClient() + .getPrimaryKeyColumIndex(wantedFields, false); + } catch (Exception e) + { + e.printStackTrace(); + } + int totalRows = resultTable.getRowCount(); + for (int row = 0; row < totalRows; row++) + { + String id = (String) resultTable.getValueAt(row, primaryKeyColIndex); + if (paginatorCart.contains(id)) + { + resultTable.addRowSelectionInterval(row, row); + } + } + validateSelection(); + } + + public void refreshPaginatorState() + { + setPrevPageButtonEnabled(false); + setNextPageButtonEnabled(false); + if (resultSetCount == 0 && pageLimit == 0) + { + return; + } + if (resultSetCount >= pageLimit) + { + setNextPageButtonEnabled(true); + } + if (offSet >= pageLimit) + { + setPrevPageButtonEnabled(true); + } + } + public void referesh() { mainFrame.setTitle(getFTSFrameTitle());