X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Ffts%2Fservice%2Fpdb%2FPDBFTSPanel.java;h=00839712de268d68dfc2648252b42243b6fa1967;hb=4a3def9f59cefe629c9a33d87483283aee085928;hp=19f7db4f3b90562e33ed6b7a298efcf390124d71;hpb=cef8dbc4cf7c8b47864b11aad36596901003639a;p=jalview.git

diff --git a/src/jalview/fts/service/pdb/PDBFTSPanel.java b/src/jalview/fts/service/pdb/PDBFTSPanel.java
index 19f7db4..0083971 100644
--- a/src/jalview/fts/service/pdb/PDBFTSPanel.java
+++ b/src/jalview/fts/service/pdb/PDBFTSPanel.java
@@ -26,6 +26,8 @@ import jalview.fts.api.FTSRestClientI;
 import jalview.fts.core.FTSRestRequest;
 import jalview.fts.core.FTSRestResponse;
 import jalview.fts.core.GFTSPanel;
+import jalview.gui.Help;
+import jalview.gui.Help.HelpId;
 import jalview.gui.SequenceFetcher;
 import jalview.util.MessageManager;
 
@@ -33,19 +35,23 @@ import java.util.HashMap;
 import java.util.HashSet;
 import java.util.Map;
 
+import javax.help.HelpSetException;
+
 @SuppressWarnings("serial")
 public class PDBFTSPanel extends GFTSPanel
 {
   private static String defaultFTSFrameTitle = MessageManager
           .getString("label.pdb_sequence_fetcher");
 
-  private static Map<String, Integer> tempUserPrefs = new HashMap<String, Integer>();
+  private static Map<String, Integer> tempUserPrefs = new HashMap<>();
 
   private static final String PDB_FTS_CACHE_KEY = "CACHE.PDB_FTS";
 
+  private static final String PDB_AUTOSEARCH = "FTS.PDB.AUTOSEARCH";
+
   public PDBFTSPanel(SequenceFetcher fetcher)
   {
-    super();
+    super(fetcher);
     pageLimit = PDBFTSRestClient.getInstance().getDefaultResponsePageSize();
     this.seqFetcher = fetcher;
     this.progressIndicator = (fetcher == null) ? null
@@ -119,16 +125,15 @@ public class PDBFTSPanel extends GFTSPanel
 
           if (isPaginationEnabled() && resultSetCount > 0)
           {
+            String f1 = totalNumberformatter
+                    .format(Integer.valueOf(offSet + 1));
+            String f2 = totalNumberformatter
+                    .format(Integer.valueOf(offSet + resultSetCount));
+            String f3 = totalNumberformatter
+                    .format(Integer.valueOf(totalResultSetCount));
             updateSearchFrameTitle(defaultFTSFrameTitle + " - " + result
-                    + " "
-                    + totalNumberformatter.format((Number) (offSet + 1))
-                    + " to "
-                    + totalNumberformatter
-                            .format((Number) (offSet + resultSetCount))
-                    + " of "
-                    + totalNumberformatter
-                            .format((Number) totalResultSetCount)
-                    + " " + " (" + (endTime - startTime) + " milli secs)");
+                    + " " + f1 + " to " + f2 + " of " + f3 + " " + " ("
+                    + (endTime - startTime) + " milli secs)");
           }
           else
           {
@@ -188,7 +193,7 @@ public class PDBFTSPanel extends GFTSPanel
     // mainFrame.dispose();
     disableActionButtons();
     StringBuilder selectedIds = new StringBuilder();
-    HashSet<String> selectedIdsSet = new HashSet<String>();
+    HashSet<String> selectedIdsSet = new HashSet<>();
     int primaryKeyColIndex = 0;
     try
     {
@@ -218,9 +223,8 @@ public class PDBFTSPanel extends GFTSPanel
     }
 
     String ids = selectedIds.toString();
-    // System.out.println(">>>>>>>>>>>>>>>> selected Ids: " + ids);
-    seqFetcher.getTextArea().setText(ids);
-    Thread worker = new Thread(seqFetcher);
+    seqFetcher.setQuery(ids);
+    Thread worker = new Thread(seqFetcher, "PDBFTSSeqFetcher");
     worker.start();
     delayAndEnableActionButtons();
   }
@@ -281,4 +285,21 @@ public class PDBFTSPanel extends GFTSPanel
     return PDB_FTS_CACHE_KEY;
   }
 
+  @Override
+  public String getAutosearchPreference()
+  {
+    return PDB_AUTOSEARCH;
+  }
+
+  @Override
+  protected void showHelp()
+  {
+    try
+    {
+      Help.showHelpWindow(HelpId.PdbFts);
+    } catch (HelpSetException e1)
+    {
+      e1.printStackTrace();
+    }
+  }
 }