X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Ffts%2Fservice%2Funiprot%2FUniprotFTSPanel.java;h=182e29b311018cf3e9adc741df0893f3a022b9de;hb=a3d82d30b2bc55f250bbf1c94975308407e8aae7;hp=020331aeaa4ab082dd6f625fb5fccd013ef1ce29;hpb=cef8dbc4cf7c8b47864b11aad36596901003639a;p=jalview.git

diff --git a/src/jalview/fts/service/uniprot/UniprotFTSPanel.java b/src/jalview/fts/service/uniprot/UniprotFTSPanel.java
index 020331a..182e29b 100644
--- a/src/jalview/fts/service/uniprot/UniprotFTSPanel.java
+++ b/src/jalview/fts/service/uniprot/UniprotFTSPanel.java
@@ -26,6 +26,8 @@ import jalview.fts.api.FTSRestClientI;
 import jalview.fts.core.FTSRestRequest;
 import jalview.fts.core.FTSRestResponse;
 import jalview.fts.core.GFTSPanel;
+import jalview.gui.Help;
+import jalview.gui.Help.HelpId;
 import jalview.gui.SequenceFetcher;
 import jalview.util.MessageManager;
 
@@ -33,6 +35,8 @@ import java.util.HashMap;
 import java.util.HashSet;
 import java.util.Map;
 
+import javax.help.HelpSetException;
+
 @SuppressWarnings("serial")
 public class UniprotFTSPanel extends GFTSPanel
 {
@@ -44,9 +48,17 @@ public class UniprotFTSPanel extends GFTSPanel
 
   private static final String UNIPROT_FTS_CACHE_KEY = "CACHE.UNIPROT_FTS";
 
+  private static final String UNIPROT_AUTOSEARCH = "FTS.UNIPROT.AUTOSEARCH";
+
+  /**
+   * Constructor given an (optional) sequence fetcher panel to revert to on
+   * clicking the 'Back' button
+   * 
+   * @param fetcher
+   */
   public UniprotFTSPanel(SequenceFetcher fetcher)
   {
-    super();
+    super(fetcher);
     pageLimit = UniProtFTSRestClient.getInstance()
             .getDefaultResponsePageSize();
     this.seqFetcher = fetcher;
@@ -120,13 +132,15 @@ public class UniprotFTSPanel extends GFTSPanel
           {
             updateSearchFrameTitle(defaultFTSFrameTitle + " - " + result
                     + " "
-                    + totalNumberformatter.format((Number) (offSet + 1))
+                    + totalNumberformatter
+                            .format(Integer.valueOf(offSet + 1))
                     + " to "
                     + totalNumberformatter
-                            .format((Number) (offSet + resultSetCount))
+                            .format(Integer
+                                    .valueOf(offSet + resultSetCount))
                     + " of "
                     + totalNumberformatter
-                            .format((Number) totalResultSetCount)
+                            .format(Integer.valueOf(totalResultSetCount))
                     + " " + " (" + (endTime - startTime) + " milli secs)");
           }
           else
@@ -207,8 +221,7 @@ public class UniprotFTSPanel extends GFTSPanel
     }
 
     String ids = selectedIds.toString();
-    // System.out.println(">>>>>>>>>>>>>>>> selected Ids: " + ids);
-    seqFetcher.getTextArea().setText(ids);
+    seqFetcher.setQuery(ids);
     Thread worker = new Thread(seqFetcher);
     worker.start();
     delayAndEnableActionButtons();
@@ -237,4 +250,22 @@ public class UniprotFTSPanel extends GFTSPanel
   {
     return UNIPROT_FTS_CACHE_KEY;
   }
+
+  @Override
+  public String getAutosearchPreference()
+  {
+    return UNIPROT_AUTOSEARCH;
+  }
+
+  @Override
+  protected void showHelp()
+  {
+    try
+    {
+      Help.showHelpWindow(HelpId.UniprotFts);
+    } catch (HelpSetException e1)
+    {
+      e1.printStackTrace();
+    }
+  }
 }