X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Ffts%2Fservice%2Funiprot%2FUniprotFTSPanel.java;h=dcef358906bc90251d7d323cce31bb5046104139;hb=ce26ffcae5e876cf4127173c92f0eddffc9830da;hp=51d773566219ddf464ccf0fdf006f59e66771fb4;hpb=007af0c9001900071f6d8e9214143f79e10f4938;p=jalview.git
diff --git a/src/jalview/fts/service/uniprot/UniprotFTSPanel.java b/src/jalview/fts/service/uniprot/UniprotFTSPanel.java
index 51d7735..dcef358 100644
--- a/src/jalview/fts/service/uniprot/UniprotFTSPanel.java
+++ b/src/jalview/fts/service/uniprot/UniprotFTSPanel.java
@@ -1,14 +1,44 @@
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see .
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
+
package jalview.fts.service.uniprot;
+import jalview.fts.api.FTSDataColumnI;
import jalview.fts.api.FTSRestClientI;
+import jalview.fts.core.FTSRestRequest;
+import jalview.fts.core.FTSRestResponse;
import jalview.fts.core.GFTSPanel;
import jalview.gui.SequenceFetcher;
import jalview.util.MessageManager;
+import java.util.HashSet;
+
@SuppressWarnings("serial")
public class UniprotFTSPanel extends GFTSPanel
{
+ private static String defaultFTSFrameTitle = MessageManager
+ .getString("label.uniprot_sequence_fetcher");
+
+ private String ftsFrameTitle = defaultFTSFrameTitle;
public UniprotFTSPanel(SequenceFetcher seqFetcher)
{
@@ -18,30 +48,117 @@ public class UniprotFTSPanel extends GFTSPanel
}
@Override
- public void txt_search_ActionPerformed()
+ public void searchAction()
{
- // TODO Auto-generated method stub
+ new Thread()
+ {
+ @Override
+ public void run()
+ {
+ ftsFrameTitle = defaultFTSFrameTitle;
+ reset();
+ if (getTypedText().length() > 0)
+ {
+ setSearchInProgress(true);
+ long startTime = System.currentTimeMillis();
+
+ String searchTarget = ((FTSDataColumnI) cmb_searchTarget
+ .getSelectedItem()).getCode();
+
+ wantedFields = UniProtFTSRestClient.getInstance()
+ .getAllDefaulDisplayedDataColumns();
+ String searchTerm = txt_search.getText();
+
+ FTSRestRequest request = new FTSRestRequest();
+ request.setFieldToSearchBy(searchTarget);
+ request.setSearchTerm(searchTerm);
+ request.setWantedFields(wantedFields);
+ FTSRestClientI uniProtRestCleint = UniProtFTSRestClient
+ .getInstance();
+ FTSRestResponse resultList;
+ try
+ {
+ resultList = uniProtRestCleint.executeRequest(request);
+ } catch (Exception e)
+ {
+ e.printStackTrace();
+ setErrorMessage(e.getMessage());
+ checkForErrors();
+ return;
+ }
+
+ if (resultList.getSearchSummary() != null
+ && resultList.getSearchSummary().size() > 0)
+ {
+ getResultTable().setModel(
+ FTSRestResponse.getTableModel(request,
+ resultList.getSearchSummary()));
+ FTSRestResponse.configureTableColumn(getResultTable(),
+ wantedFields);
+ getResultTable().setVisible(true);
+ }
+
+ long endTime = System.currentTimeMillis();
+ int resultSetCount = resultList.getNumberOfItemsFound();
+ String result = (resultSetCount > 1) ? MessageManager
+ .getString("label.results") : MessageManager
+ .getString("label.result");
+ updateSearchFrameTitle(defaultFTSFrameTitle + " - "
+ + resultSetCount + " " + result + " ("
+ + (endTime - startTime) + " milli secs)");
+ setSearchInProgress(false);
+ }
+ }
+ }.start();
}
@Override
- public void btn_ok_ActionPerformed()
+ public void okAction()
{
- // TODO Auto-generated method stub
+ disableActionButtons();
+ StringBuilder selectedIds = new StringBuilder();
+ HashSet selectedIdsSet = new HashSet();
+ int primaryKeyColIndex = 0;
+ try
+ {
+ primaryKeyColIndex = getFTSRestClient().getPrimaryKeyColumIndex(
+ wantedFields, false);
+ } catch (Exception e)
+ {
+ e.printStackTrace();
+ }
+ int[] selectedRows = getResultTable().getSelectedRows();
+ for (int summaryRow : selectedRows)
+ {
+ String idStr = getResultTable().getValueAt(summaryRow,
+ primaryKeyColIndex).toString();
+ selectedIdsSet.add(idStr);
+ }
- }
+ for (String selectedId : selectedIdsSet)
+ {
+ selectedIds.append(selectedId).append(";");
+ }
+ String ids = selectedIds.toString();
+ // System.out.println(">>>>>>>>>>>>>>>> selected Ids: " + ids);
+ seqFetcher.getTextArea().setText(ids);
+ Thread worker = new Thread(seqFetcher);
+ worker.start();
+ delayAndEnableActionButtons();
+ }
@Override
public FTSRestClientI getFTSRestClient()
{
- return UniProtRestClient.getInstance();
+ return UniProtFTSRestClient.getInstance();
}
@Override
public String getFTSFrameTitle()
{
- return MessageManager.getString("label.uniprot_sequence_fetcher");
+ return ftsFrameTitle;
}
}