X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FAlignFrame.java;fp=src%2Fjalview%2Fgui%2FAlignFrame.java;h=01353d893f56dfd4803356249fd9db4fff83586d;hb=6dd554fdbf34db6b79595d5027159d20225f4894;hp=e3efa59aa3d729505a47d4432d213252f8754319;hpb=15a454d6de78056c057ab64c5932dda788da979a;p=jalview.git

diff --git a/src/jalview/gui/AlignFrame.java b/src/jalview/gui/AlignFrame.java
index e3efa59..01353d8 100644
--- a/src/jalview/gui/AlignFrame.java
+++ b/src/jalview/gui/AlignFrame.java
@@ -1141,7 +1141,7 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener,
       }
 
       ExportData exportData = getAlignmentForExport(format);
-      FormatAdapter f = new FormatAdapter(viewport);
+      FormatAdapter f = new FormatAdapter(alignPanel);
       String output = f.formatSequences(format,
               exportData.getAlignment(), // class cast exceptions will
               // occur in the distant future
@@ -1222,7 +1222,8 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener,
     cap.setForInput(null);
     try
     {
-      cap.setText(new FormatAdapter(viewport).formatSequences(
+      cap.setText(new FormatAdapter(alignPanel, exportData.getSettings())
+              .formatSequences(
               e.getActionCommand(),
  exportData.getAlignment(),
               exportData.getOmitHidden(), exportData.getStartEndPostions(),