X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FAlignFrame.java;fp=src%2Fjalview%2Fgui%2FAlignFrame.java;h=0745b853e5f22cb0eb62eb1feb66f57a813bce8e;hb=eb3e681d6e82ccdd5d312d1981dfb306e7f479f0;hp=4f13a780ccf18be43213908eb5f284c9a88c1b48;hpb=cb31e23d9138e481479623374aed7767bf8934d2;p=jalview.git

diff --git a/src/jalview/gui/AlignFrame.java b/src/jalview/gui/AlignFrame.java
index 4f13a78..0745b85 100644
--- a/src/jalview/gui/AlignFrame.java
+++ b/src/jalview/gui/AlignFrame.java
@@ -4864,7 +4864,7 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener,
                   }
                   mtch = idm.findAllIdMatches(pdbfn);
                 }
-                FileFormatI type=null;
+                FileFormatI type = null;
                 if (mtch != null)
                 {
                   try
@@ -4882,7 +4882,7 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener,
                 }
                 // File wasn't named like one of the sequences or wasn't a PDB
                 // file.
-                filesnotmatched.add(new Object[] { file, protocol, type});
+                filesnotmatched.add(new Object[] { file, protocol, type });
               }
             }
             int assocfiles = 0;
@@ -4936,7 +4936,7 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener,
                  */
                 for (Object[] o : filesmatched)
                 {
-                  filesnotmatched.add(new Object[] { o[0], o[1]});
+                  filesnotmatched.add(new Object[] { o[0], o[1] });
                 }
               }
             }
@@ -4960,7 +4960,8 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener,
               }
               for (Object[] fn : filesnotmatched)
               {
-                loadJalviewDataFile(fn[0], (DataSourceType) fn[1], (FileFormatI)fn[2], null);
+                loadJalviewDataFile(fn[0], (DataSourceType) fn[1],
+                        (FileFormatI) fn[2], null);
               }
 
             }
@@ -5854,7 +5855,8 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener,
       }
     }
     alignPanel.validateAnnotationDimensions(true);
-    // TODO this triggers relayout of annotation panel - otherwise annotation label height is different to panel height
+    // TODO this triggers relayout of annotation panel - otherwise annotation
+    // label height is different to panel height
     alignPanel.fontChanged();
     alignPanel.alignmentChanged();
   }