X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FAlignFrame.java;h=132417367797b071225e5d2c02bc9797a2b179d1;hb=8004878db16757b62ee2c35738506bc4509428cf;hp=5ee6c6264e8e46bc5a6529f367f2bf779623098a;hpb=7535505ef73485ad43881cb72a6c52cfb0033c63;p=jalview.git

diff --git a/src/jalview/gui/AlignFrame.java b/src/jalview/gui/AlignFrame.java
index 5ee6c62..1324173 100755
--- a/src/jalview/gui/AlignFrame.java
+++ b/src/jalview/gui/AlignFrame.java
@@ -84,6 +84,13 @@ public class AlignFrame extends GAlignFrame
     else if(e.getActionCommand().equals("PFAM"))
       suffix = new String[]{"pfam"};
 
+    if(e.getActionCommand().equals("XML DUMP"))
+    {
+      XMLStore store = new XMLStore();
+      store.store(viewport);
+      return;
+    }
+
     JalviewFileChooser chooser = new JalviewFileChooser(jalview.bin.Cache.getProperty("LAST_DIRECTORY")
         , suffix, e.getActionCommand()+" file");
     chooser.setFileView(new JalviewFileView());
@@ -577,7 +584,6 @@ public class AlignFrame extends GAlignFrame
 
   public void font_actionPerformed(ActionEvent e)
   {
-   // JOptionPane op = new JOptionPane();
     JInternalFrame frame = new JInternalFrame();
     FontChooser fc = new FontChooser( alignPanel, frame );
     frame.setContentPane(fc);
@@ -637,6 +643,12 @@ public class AlignFrame extends GAlignFrame
 
   public void annotationPanelMenuItem_actionPerformed(ActionEvent e)
   {
+    if(annotationPanelMenuItem.isSelected() && viewport.getWrapAlignment())
+    {
+      annotationPanelMenuItem.setSelected(false);
+      return;
+    }
+    viewport.setShowAnnotation( annotationPanelMenuItem.isSelected() );
     alignPanel.setAnnotationVisible( annotationPanelMenuItem.isSelected() );
   }