X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FAlignFrame.java;h=15b1fb4ee5cf6235ad8b3c00fc07e22df5937e9c;hb=f931c557266d95b3f4ab5b64bd108123c90e85ab;hp=b310ab9f448bfe79bf310a04214a883a78ff125c;hpb=29d4809e01ace4e6ac449ec944bfeec70070ac81;p=jalview.git

diff --git a/src/jalview/gui/AlignFrame.java b/src/jalview/gui/AlignFrame.java
index b310ab9..15b1fb4 100644
--- a/src/jalview/gui/AlignFrame.java
+++ b/src/jalview/gui/AlignFrame.java
@@ -4787,8 +4787,12 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener,
           }
           else
           {
+            /*
+             * copy peptide sequences, and add in any alternate products
+             * of their located coding xrefs
+             */
             copyAlignment = AlignmentUtils.makeCopyAlignment(
-                    sequenceSelection, xrefs.getSequencesArray());
+                    sequenceSelection, xrefs.getSequencesArray(), dataset);
           }
           copyAlignment.setGapCharacter(AlignFrame.this.viewport
                   .getGapCharacter());