X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FAlignFrame.java;h=28ff0a1630e716ecabbc0c3cf2761aca29f8c9db;hb=6e03093cc1fa546cb12cebcd2df4a7004c81b928;hp=cb769bb0176afda5d1da366a34069b3e0ce892a3;hpb=7ae76399fefb94ffa0bd7c5e890bc5a17e457f66;p=jalview.git

diff --git a/src/jalview/gui/AlignFrame.java b/src/jalview/gui/AlignFrame.java
index cb769bb..28ff0a1 100644
--- a/src/jalview/gui/AlignFrame.java
+++ b/src/jalview/gui/AlignFrame.java
@@ -4124,7 +4124,9 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener,
       {
         JMenuItem tm = new JMenuItem();
         ScoreModelI sm = ResidueProperties.scoreMatrices.get(pwtype);
-        if (sm.isProtein() == !viewport.getAlignment().isNucleotide())
+        if (sm.isDNA() == viewport.getAlignment().isNucleotide()
+                || sm.isProtein() == !viewport.getAlignment()
+                        .isNucleotide())
         {
           String smn = MessageManager.getStringOrReturn(
                   "label.score_model_", sm.getName());