X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FAlignFrame.java;h=575746a25cb64ee8d36ceff1ff1c490015cfbfa1;hb=ff5f2b888385f85e9fd99a226c9da098a06016d8;hp=74f081b1a6866a1251a90a197ac310545b9c484e;hpb=e986fde3ae4b511e4c5eccfc1a6e4591a5e77661;p=jalview.git

diff --git a/src/jalview/gui/AlignFrame.java b/src/jalview/gui/AlignFrame.java
index 74f081b..575746a 100755
--- a/src/jalview/gui/AlignFrame.java
+++ b/src/jalview/gui/AlignFrame.java
@@ -276,7 +276,6 @@ public class AlignFrame
       }
 
       viewport.showSequenceFeatures = true;
-      ((Alignment)viewport.alignment).featuresAdded = true;
 
       alignPanel.repaint();
 
@@ -736,7 +735,6 @@ public class AlignFrame
     }
 
     FastaFile ff = new FastaFile();
-    ff.addDBPrefix( viewport.showDBPrefix );
     ff.addJVSuffix( viewport.showJVSuffix );
     c.setContents(new StringSelection( ff.print(seqs)), this);
     Desktop.jalviewClipboard = new Object[]{seqs,  viewport.alignment.getDataset()};
@@ -1322,14 +1320,6 @@ public class AlignFrame
     alignPanel.repaint();
   }
 
-  public void seqDBRef_actionPerformed(ActionEvent e)
-  {
-    viewport.setShowDBPrefix(seqDBRef.isSelected());
-
-    alignPanel.idPanel.idCanvas.setPreferredSize(alignPanel.calculateIdWidth());
-    alignPanel.repaint();
-  }
-
 
   /**
    * DOCUMENT ME!
@@ -1432,7 +1422,7 @@ public class AlignFrame
   {
     viewport.showSequenceFeatures(sequenceFeatures.isSelected());
 
-    if (viewport.showSequenceFeatures &&
+  /*  if (viewport.showSequenceFeatures &&
         ! ( (Alignment) viewport.alignment.getDataset()).featuresAdded)
     {
       System.out.println("new fetcher");
@@ -1440,7 +1430,7 @@ public class AlignFrame
          alignment,
           alignPanel);
     }
-
+*/
     featureSettings.setEnabled(true);
 
     alignPanel.repaint();
@@ -1918,7 +1908,7 @@ public class AlignFrame
   {
     addHistoryItem(new HistoryItem("ID Sort", viewport.alignment,
                                    HistoryItem.SORT));
-    AlignmentSorter.sortByID(viewport.getAlignment(), viewport.showDBPrefix);
+    AlignmentSorter.sortByID(viewport.getAlignment());
     alignPanel.repaint();
   }