X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FAlignFrame.java;h=5c4241805608c149e04a48a6a1bdde2fdd72241b;hb=770bcd6eedfcb6329d0e1310502a0a03c7279b18;hp=269e1039204a7cb4dbac09955e9bfe1adf6dd70e;hpb=18a869338d12b9069496e3e07b994df01ffe78f4;p=jalview.git

diff --git a/src/jalview/gui/AlignFrame.java b/src/jalview/gui/AlignFrame.java
index 269e103..5c42418 100644
--- a/src/jalview/gui/AlignFrame.java
+++ b/src/jalview/gui/AlignFrame.java
@@ -5148,7 +5148,7 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener,
       // try to parse as annotation.
       boolean isAnnotation = (format == null || format
               .equalsIgnoreCase("PFAM")) ? new AnnotationFile()
-              .readAnnotationFile(viewport.getAlignment(), file, protocol)
+              .annotateAlignmentView(viewport, file, protocol)
               : false;
 
       if (!isAnnotation)