X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FAlignFrame.java;h=71cbcaf6e9e76e51cb36e20060cc760bba810469;hb=6e514532a128c47d099985375d6126111ef548cb;hp=09d3594edc6e2cb91736467c1cfde938981fc040;hpb=8647c805617f33b905c4f72ebe30aab3c21b56f4;p=jalview.git

diff --git a/src/jalview/gui/AlignFrame.java b/src/jalview/gui/AlignFrame.java
index 09d3594..71cbcaf 100644
--- a/src/jalview/gui/AlignFrame.java
+++ b/src/jalview/gui/AlignFrame.java
@@ -5266,6 +5266,11 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener,
             new JnetAnnotationMaker();
             JnetAnnotationMaker.add_annotation(predictions,
                     viewport.getAlignment(), 0, false);
+            SequenceI repseq = viewport.getAlignment().getSequenceAt(0);
+            viewport.getAlignment().setSeqrep(repseq);
+            ColumnSelection cs = new ColumnSelection();
+            cs.hideInsertionsFor(repseq);
+            viewport.setColumnSelection(cs);
             isAnnotation = true;
           }
           else