X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FAlignFrame.java;h=b6e0f7018fa0317e95194cad9786eaa31812587e;hb=e6c50ddb6fedc9917c9fbe112750680feb42cd12;hp=938b047a162beac29c50f2fe1c4a8d712990b9ec;hpb=3448f766a6dfe127f1d01e533c14d10aede962fa;p=jalview.git

diff --git a/src/jalview/gui/AlignFrame.java b/src/jalview/gui/AlignFrame.java
index 938b047..b6e0f70 100755
--- a/src/jalview/gui/AlignFrame.java
+++ b/src/jalview/gui/AlignFrame.java
@@ -160,7 +160,12 @@ public class AlignFrame
    addKeyListener();
 
   }
-
+  /**
+   * Change the filename and format for the alignment, and
+   * enable the 'reload' button functionality.
+   * @param file valid filename
+   * @param format format of file
+   */
   public void setFileName(String file, String format)
   {
      fileName = file;
@@ -1442,9 +1447,9 @@ public class AlignFrame
   }
 
   /**
-   * DOCUMENT ME!
+   * Paste contents of Jalview clipboard
    *
-   * @param newAlignment DOCUMENT ME!
+   * @param newAlignment true to paste to a new alignment, otherwise add to this.
    */
   void paste(boolean newAlignment)
   {