X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FAlignFrame.java;h=c0216aa4594b67120cc88e4562b73479166a1973;hb=5f47773c7eefd6506e5f11266022993e7cf2459e;hp=ec75ee5cb8397f4eee494846054f5bebf4e5e848;hpb=57d6a9e73c82ce2663a56dde4e70d997198f9e12;p=jalview.git

diff --git a/src/jalview/gui/AlignFrame.java b/src/jalview/gui/AlignFrame.java
index ec75ee5..c0216aa 100755
--- a/src/jalview/gui/AlignFrame.java
+++ b/src/jalview/gui/AlignFrame.java
@@ -280,7 +280,7 @@ public class AlignFrame extends GAlignFrame
       current = viewport.getAlignment().getSequenceAt(i);
       jSize = current.getLength();
       for (int j=0; j < jSize; j++)
-        if (current.getCharAt(j)=='-' || current.getCharAt(j)=='.' || current.getCharAt(j)==' ')
+        if(jalview.util.Comparison.isGap(current.getCharAt(i)))
         {
           current.deleteCharAt(j);
           j--;
@@ -521,6 +521,7 @@ public class AlignFrame extends GAlignFrame
       frame.setContentPane(sp);
       Desktop.addInternalFrame(frame, "Conservation Colour Increment", 400, 90);
       frame.setMaximizable(false);
+      frame.setResizable(false);
     }
   }
 
@@ -535,6 +536,7 @@ public class AlignFrame extends GAlignFrame
       frame.setContentPane(sp);
       Desktop.addInternalFrame(frame, "Percentage Identity Threshold", 400, 90);
       frame.setMaximizable(false);
+      frame.setResizable(false);
     }
   }
 
@@ -606,6 +608,12 @@ public class AlignFrame extends GAlignFrame
 
   public void removeRedundancyMenuItem_actionPerformed(ActionEvent e)
   {
+    RedundancyPanel sp = new RedundancyPanel(alignPanel);
+    JInternalFrame frame = new JInternalFrame();
+    frame.setContentPane(sp);
+    Desktop.addInternalFrame(frame, "Redundancy threshold selection", 400, 100);
+    frame.setMaximizable(false);
+    frame.setResizable(false);
 
   }