X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FAlignFrame.java;h=dd8fb7a14ffee010aef42cc539e47bb412b3b7ea;hb=d63bbc2d56c86d7dca68e76104a8682b5e38c763;hp=84edb4eae4694c7c58046599c521ea0f6498587f;hpb=72d146eb50571b97a0f1190cbfa01d5d90428764;p=jalview.git

diff --git a/src/jalview/gui/AlignFrame.java b/src/jalview/gui/AlignFrame.java
index 84edb4e..dd8fb7a 100644
--- a/src/jalview/gui/AlignFrame.java
+++ b/src/jalview/gui/AlignFrame.java
@@ -844,8 +844,9 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener,
     showGroupConservation.setEnabled(!nucleotide);
     rnahelicesColour.setEnabled(nucleotide);
     purinePyrimidineColour.setEnabled(nucleotide);
-    showComplementMenuItem.setText(MessageManager
-            .getString(nucleotide ? "label.protein" : "label.nucleotide"));
+    showComplementMenuItem.setText(nucleotide ? MessageManager
+            .getString("label.protein") : MessageManager
+            .getString("label.nucleotide"));
     setColourSelected(jalview.bin.Cache.getDefault(
             nucleotide ? Preferences.DEFAULT_COLOUR_NUC
                     : Preferences.DEFAULT_COLOUR_PROT, "None"));
@@ -3214,30 +3215,6 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener,
   }
 
   /**
-   * Set or clear 'Show Sequence Features'
-   * 
-   * @param evt
-   *          DOCUMENT ME!
-   */
-  @Override
-  public void showSeqFeaturesHeight_actionPerformed(ActionEvent evt)
-  {
-    viewport.setShowSequenceFeaturesHeight(showSeqFeaturesHeight
-            .isSelected());
-    if (viewport.isShowSequenceFeaturesHeight())
-    {
-      // ensure we're actually displaying features
-      viewport.setShowSequenceFeatures(true);
-      showSeqFeatures.setSelected(true);
-    }
-    alignPanel.paintAlignment(true);
-    if (alignPanel.getOverviewPanel() != null)
-    {
-      alignPanel.getOverviewPanel().updateOverviewImage();
-    }
-  }
-
-  /**
    * Action on toggle of the 'Show annotations' menu item. This shows or hides
    * the annotations panel as a whole.
    * 
@@ -4462,22 +4439,18 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener,
           // object broker mechanism.
           final Vector<JMenu> wsmenu = new Vector<JMenu>();
           final IProgressIndicator af = me;
+
+          /*
+           * do not i18n these strings - they are hard-coded in class
+           * compbio.data.msa.Category, Jws2Discoverer.isRecalculable() and
+           * SequenceAnnotationWSClient.initSequenceAnnotationWSClient()
+           */
           final JMenu msawsmenu = new JMenu("Alignment");
           final JMenu secstrmenu = new JMenu(
                   "Secondary Structure Prediction");
           final JMenu seqsrchmenu = new JMenu("Sequence Database Search");
           final JMenu analymenu = new JMenu("Analysis");
           final JMenu dismenu = new JMenu("Protein Disorder");
-          // final JMenu msawsmenu = new
-          // JMenu(MessageManager.getString("label.alignment"));
-          // final JMenu secstrmenu = new
-          // JMenu(MessageManager.getString("label.secondary_structure_prediction"));
-          // final JMenu seqsrchmenu = new
-          // JMenu(MessageManager.getString("label.sequence_database_search"));
-          // final JMenu analymenu = new
-          // JMenu(MessageManager.getString("label.analysis"));
-          // final JMenu dismenu = new
-          // JMenu(MessageManager.getString("label.protein_disorder"));
           // JAL-940 - only show secondary structure prediction services from
           // the legacy server
           if (// Cache.getDefault("SHOW_JWS1_SERVICES", true)