X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FAlignFrame.java;h=df074093ab8e53b3435ba942f7c7739b1e4740c1;hb=cffabc9d0dce26594ab974db993ce919a9e63b8d;hp=177c3acac5f8348e048bd89a5cde95fc49f31dde;hpb=7c5e7c1c51a48eab1b217a221df82748c35b76b1;p=jalview.git

diff --git a/src/jalview/gui/AlignFrame.java b/src/jalview/gui/AlignFrame.java
index 177c3ac..df07409 100644
--- a/src/jalview/gui/AlignFrame.java
+++ b/src/jalview/gui/AlignFrame.java
@@ -53,6 +53,7 @@ import jalview.datamodel.SequenceGroup;
 import jalview.datamodel.SequenceI;
 import jalview.io.AlignmentProperties;
 import jalview.io.AnnotationFile;
+import jalview.io.BioJsHTMLOutput;
 import jalview.io.FeaturesFile;
 import jalview.io.FileLoader;
 import jalview.io.FormatAdapter;
@@ -1231,6 +1232,12 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener,
             alignPanel.seqPanel.seqCanvas.getFeatureRenderer());
   }
 
+  @Override
+  public void bioJSMenuItem_actionPerformed(ActionEvent e)
+  {
+    new BioJsHTMLOutput(alignPanel,
+            alignPanel.seqPanel.seqCanvas.getFeatureRenderer());
+  }
   public void createImageMap(File file, String image)
   {
     alignPanel.makePNGImageMap(file, image);
@@ -1260,6 +1267,10 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener,
     alignPanel.makeEPS(f);
   }
 
+  public void createSVG(File f)
+  {
+    alignPanel.makeSVG(f);
+  }
   @Override
   public void pageSetup_actionPerformed(ActionEvent e)
   {
@@ -5055,7 +5066,8 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener,
               {
                 PDBEntry pe = new AssociatePdbFileWithSeq()
                         .associatePdbWithSeq((String) fm[0],
-                                (String) fm[1], toassoc, false);
+                                (String) fm[1], toassoc, false,
+                                Desktop.instance);
                 if (pe != null)
                 {
                   System.err.println("Associated file : "