X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FAlignFrame.java;h=fc2fe24fc662454ee0bb6975588f22acbd7a663f;hb=57d863cc978bfd638da0e21a37b425be6251ce13;hp=06272c3154b517d5b5145cb14fbd445f37dac61a;hpb=f5db0ff259cbb1132f6c061615d912b0668fd728;p=jalview.git

diff --git a/src/jalview/gui/AlignFrame.java b/src/jalview/gui/AlignFrame.java
index 06272c3..fc2fe24 100755
--- a/src/jalview/gui/AlignFrame.java
+++ b/src/jalview/gui/AlignFrame.java
@@ -65,6 +65,7 @@ import jalview.schemes.HelixColourScheme;
 import jalview.schemes.HydrophobicColourScheme;
 import jalview.schemes.NucleotideColourScheme;
 import jalview.schemes.PIDColourScheme;
+import jalview.schemes.PurinePyrimidineColourScheme;
 import jalview.schemes.ResidueProperties;
 import jalview.schemes.StrandColourScheme;
 import jalview.schemes.TaylorColourScheme;
@@ -2964,10 +2965,25 @@ public class AlignFrame extends GAlignFrame implements DropTargetListener,
     changeColour(new NucleotideColourScheme());
   }
 
+  public void purinePyrimidineColour_actionPerformed(ActionEvent e)
+  {
+    changeColour(new PurinePyrimidineColourScheme());
+  }
+  /*
+  public void covariationColour_actionPerformed(ActionEvent e)
+  {
+    changeColour(new CovariationColourScheme(viewport.alignment.getAlignmentAnnotation()[0]));
+  }
+  */
   public void annotationColour_actionPerformed(ActionEvent e)
   {
     new AnnotationColourChooser(viewport, alignPanel);
   }
+  
+  public void rnahelicesColour_actionPerformed(ActionEvent e)
+  {
+    new RNAHelicesColourChooser(viewport, alignPanel);
+  }
 
   /**
    * DOCUMENT ME!