X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FAlignViewport.java;h=1c6c4537fdba534388698c0bd9544f876ce97ce2;hb=028bc343135a72515c6b109eb0deb8d6034ca520;hp=b21f47e67c792ad0067c4d9903cd9ef634f4fb64;hpb=e142bcca7d3c8a10695b87f94bc724cc2f5ab165;p=jalview.git

diff --git a/src/jalview/gui/AlignViewport.java b/src/jalview/gui/AlignViewport.java
index b21f47e..1c6c453 100755
--- a/src/jalview/gui/AlignViewport.java
+++ b/src/jalview/gui/AlignViewport.java
@@ -20,9 +20,7 @@ public class AlignViewport
   boolean showColourText=false;
   boolean showBoxes=true;
   boolean wrapAlignment=false;
-  boolean renderGaps = false;
-  boolean groupEdit    = false;
-  boolean groupDefiningMode = true;
+  boolean renderGaps = true;
 
   ColourSchemeI globalColourScheme = null;
   boolean conservationColourSelected = false;
@@ -39,7 +37,7 @@ public class AlignViewport
   Font            font = new Font("SansSerif",Font.PLAIN,10);
   AlignmentI      alignment;
 
-  Selection       sel    = new Selection();
+  Selection       sel    = new Selection(this);
   ColumnSelection colSel = new ColumnSelection();
 
   OutputGenerator og;
@@ -276,15 +274,7 @@ public class AlignViewport
   public boolean getShowBoxes() {
     return showBoxes;
   }
- // public CommandParser getCommandLog() {
- ///   return log;
- // }
-  public boolean getGroupEdit() {
-    return groupEdit;
-  }
-  public void setGroupEdit(boolean state) {
-    groupEdit = state;
-  }
+
   public char getGapCharacter() {
     return getAlignment().getGapCharacter();
   }