X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FAlignViewport.java;h=55abea6aad668fdb2ede85aa3d8982fc1e9ea4fe;hb=36f083dc674297be2157d9f291a7cddba9d3250a;hp=3c520e39690f88bb3c2b02edd69197f2fc2344fa;hpb=1f029391e9e263b132a62eaefcc2fe68badacfd6;p=jalview.git

diff --git a/src/jalview/gui/AlignViewport.java b/src/jalview/gui/AlignViewport.java
index 3c520e3..55abea6 100644
--- a/src/jalview/gui/AlignViewport.java
+++ b/src/jalview/gui/AlignViewport.java
@@ -1098,6 +1098,8 @@ public class AlignViewport extends AlignmentViewport
       fr.orderFeatures(featureSettings);
     }
     fr.setTransparency(featureSettings.getTransparency());
+
+    fr.notifyFeaturesChanged();
   }
 
   public String getViewName()