X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FAlignViewport.java;h=f1bb8decb7924e04ba84ced59054a42cb8f351b3;hb=79631ef84a124bfefa84c24b85dc77883366ad4a;hp=7bebfa9aeb9c30939a37e1d1aeea647fa3a1b8d6;hpb=d862ec6b58b37b80416c7a65d7069f6e785276c1;p=jalview.git

diff --git a/src/jalview/gui/AlignViewport.java b/src/jalview/gui/AlignViewport.java
index 7bebfa9..f1bb8de 100644
--- a/src/jalview/gui/AlignViewport.java
+++ b/src/jalview/gui/AlignViewport.java
@@ -150,10 +150,11 @@ public class AlignViewport extends AlignmentViewport implements
   public AlignViewport(AlignmentI al, ColumnSelection hiddenColumns)
   {
     setAlignment(al);
-    if (hiddenColumns != null)
+    posProps.setHiddenColumns(hiddenColumns);
+    /*if (hiddenColumns != null)
     {
       colSel = hiddenColumns;
-    }
+    }*/
     init();
   }
 
@@ -197,10 +198,11 @@ public class AlignViewport extends AlignmentViewport implements
       Cache.log.debug("Setting viewport's view id : " + viewId);
     }
     setAlignment(al);
-    if (hiddenColumns != null)
+    posProps.setHiddenColumns(hiddenColumns);
+    /*if (hiddenColumns != null)
     {
       colSel = hiddenColumns;
-    }
+    }*/
     init();
   }
 
@@ -533,7 +535,9 @@ public class AlignViewport extends AlignmentViewport implements
     {
       end = alignment.getWidth();
     }
-    viscontigs = colSel.getVisibleContigs(start, end);
+    viscontigs = posProps.getColumnSelection()
+            .getVisibleContigs(start, end);
+    // viscontigs = colSel.getVisibleContigs(start, end);
     return viscontigs;
   }