X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FAlignViewport.java;h=f79867132ec7daec4a2c974233f51af6f5cab18c;hb=3d1147ffae5fbc5bdb7c80caa9655df656b8e67b;hp=652d8d1bd5ad5209f8b81ac5568f52594c31be96;hpb=fd29e047719a470cf304c5a41abfff5c1eac3ee8;p=jalview.git

diff --git a/src/jalview/gui/AlignViewport.java b/src/jalview/gui/AlignViewport.java
index 652d8d1..f798671 100755
--- a/src/jalview/gui/AlignViewport.java
+++ b/src/jalview/gui/AlignViewport.java
@@ -1907,4 +1907,24 @@ public class AlignViewport
     {
       centreColumnLabels =  centrecolumnlabels;
     }
+    public void updateSequenceIdColours()
+    {
+      Vector groups = alignment.getGroups();
+      if (sequenceColours==null)
+      {
+        sequenceColours = new Hashtable();
+      }
+      for (int ig=0,igSize=groups.size(); ig<igSize; ig++)
+      {
+        SequenceGroup sg = (SequenceGroup) groups.elementAt(ig);
+        if (sg.idColour!=null)
+        {
+          Vector sqs = sg.getSequences(hiddenRepSequences);
+          for (int s=0,sSize=sqs.size();s<sSize;s++)
+          {
+            sequenceColours.put(sqs.elementAt(s), sg.idColour);
+          } 
+        }
+      }
+    }
 }