X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FAlignViewport.java;h=f95179203d2bf94f45d5b4d2f0572c1838a32935;hb=65310fba3ddf0942d5f868130bca9e093888ce7a;hp=e98fb9f61d6ed43bd897aa93bdc3188a8bd0ba41;hpb=9fff97021c2c637e426f6971d54dcf3fd4191985;p=jalview.git

diff --git a/src/jalview/gui/AlignViewport.java b/src/jalview/gui/AlignViewport.java
index e98fb9f..f951792 100755
--- a/src/jalview/gui/AlignViewport.java
+++ b/src/jalview/gui/AlignViewport.java
@@ -1002,7 +1002,7 @@ public class AlignViewport
     }
 
     /**
-     * DOCUMENT ME!
+     * Property change listener for changes in alignment
      *
      * @param listener DOCUMENT ME!
      */
@@ -1024,7 +1024,7 @@ public class AlignViewport
     }
 
     /**
-     * DOCUMENT ME!
+     * Property change listener for changes in alignment
      *
      * @param prop DOCUMENT ME!
      * @param oldvalue DOCUMENT ME!
@@ -1039,12 +1039,9 @@ public class AlignViewport
     {
       ignoreGapsInConsensusCalculation = b;
       updateConsensus();
-      if(globalColourScheme!=null && globalColourScheme instanceof ResidueColourScheme)
+      if(globalColourScheme!=null)
       {
-        ((ResidueColourScheme) globalColourScheme).setThreshold(
-            ((ResidueColourScheme) globalColourScheme).getThreshold(), ignoreGapsInConsensusCalculation);
-
-
+        globalColourScheme.setThreshold(globalColourScheme.getThreshold(), ignoreGapsInConsensusCalculation);
       }
 
     }