X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FAlignmentPanel.java;h=4db029c48254460a1b1065475e561cb766bb1366;hb=4dc7619bed1c475c35f328601b5d7d46116327a6;hp=87d5933a70fddf9974753e87f2ba1d7e4988d1e2;hpb=b7c070c8110258c023fdd6e3b49ad9aab7ad2fa5;p=jalview.git

diff --git a/src/jalview/gui/AlignmentPanel.java b/src/jalview/gui/AlignmentPanel.java
index 87d5933..4db029c 100644
--- a/src/jalview/gui/AlignmentPanel.java
+++ b/src/jalview/gui/AlignmentPanel.java
@@ -101,6 +101,8 @@ public class AlignmentPanel extends GAlignmentPanel implements
    */
   private boolean dontScrollComplement;
 
+  private PropertyChangeListener propertyChangeListener;
+
   /**
    * Creates a new AlignmentPanel object.
    * 
@@ -135,7 +137,7 @@ public class AlignmentPanel extends GAlignmentPanel implements
     vscroll.addAdjustmentListener(this);
 
     final AlignmentPanel ap = this;
-    av.addPropertyChangeListener(new PropertyChangeListener()
+    propertyChangeListener = new PropertyChangeListener()
     {
       @Override
       public void propertyChange(PropertyChangeEvent evt)
@@ -146,7 +148,8 @@ public class AlignmentPanel extends GAlignmentPanel implements
           alignmentChanged();
         }
       }
-    });
+    };
+    av.addPropertyChangeListener(propertyChangeListener);
     fontChanged();
     adjustAnnotationHeight();
     updateLayout();
@@ -1278,7 +1281,7 @@ public class AlignmentPanel extends GAlignmentPanel implements
       if (file != null)
       {
         alignFrame.setProgressBar(MessageManager.formatMessage(
-              "status.saving_file", new Object[] { type.getLabel() }),
+                "status.saving_file", new Object[] { type.getLabel() }),
                 pSessionId);
       }
     }
@@ -1307,8 +1310,8 @@ public class AlignmentPanel extends GAlignmentPanel implements
 
         im = new jalview.util.ImageMaker(this, type, imageAction,
                 aDimension.getWidth(), aDimension.getHeight()
-                        + boarderBottomOffset, file,
-                imageTitle, alignFrame, pSessionId, headless);
+                        + boarderBottomOffset, file, imageTitle,
+                alignFrame, pSessionId, headless);
         if (av.getWrapAlignment())
         {
           if (im.getGraphics() != null)
@@ -1595,8 +1598,18 @@ public class AlignmentPanel extends GAlignmentPanel implements
     PaintRefresher.RemoveComponent(getSeqPanel().seqCanvas);
     PaintRefresher.RemoveComponent(getIdPanel().getIdCanvas());
     PaintRefresher.RemoveComponent(this);
+
+    /*
+     * try to ensure references are nulled
+     */
+    if (annotationPanel != null)
+    {
+      annotationPanel.dispose();
+    }
+
     if (av != null)
     {
+      av.removePropertyChangeListener(propertyChangeListener);
       jalview.structure.StructureSelectionManager ssm = av
               .getStructureSelectionManager();
       ssm.removeStructureViewerListener(getSeqPanel(), null);
@@ -1604,7 +1617,7 @@ public class AlignmentPanel extends GAlignmentPanel implements
       ssm.removeCommandListener(av);
       ssm.removeStructureViewerListener(getSeqPanel(), null);
       ssm.removeSelectionListener(getSeqPanel());
-      av.setAlignment(null);
+      av.dispose();
       av = null;
     }
     else