X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FAlignmentPanel.java;h=502ab9dc14ff63a1ae9a6a0b949e351f58462dfd;hb=a1935687c9e0bb6e861b5d607b5afd23ab544202;hp=92b9a5065cd1b64168b5eb2ffa4a4b0a40023d33;hpb=48608cc9210c919f07ffbd25567051384b7903be;p=jalview.git

diff --git a/src/jalview/gui/AlignmentPanel.java b/src/jalview/gui/AlignmentPanel.java
index 92b9a50..502ab9d 100644
--- a/src/jalview/gui/AlignmentPanel.java
+++ b/src/jalview/gui/AlignmentPanel.java
@@ -804,10 +804,6 @@ public class AlignmentPanel extends GAlignmentPanel implements
   public void paintAlignment(boolean updateOverview,
           boolean updateStructures)
   {
-    final AnnotationSorter sorter = new AnnotationSorter(getAlignment(),
-            av.isShowAutocalculatedAbove());
-    sorter.sort(getAlignment().getAlignmentAnnotation(),
-            av.getSortAnnotationsBy());
     repaint();
 
     if (updateStructures)
@@ -825,6 +821,17 @@ public class AlignmentPanel extends GAlignmentPanel implements
   }
 
   /**
+   * Sorts annotations according to currently selected preference
+   */
+  void sortAnnotations()
+  {
+    final AnnotationSorter sorter = new AnnotationSorter(getAlignment(),
+            av.isShowAutocalculatedAbove());
+    sorter.sort(getAlignment().getAlignmentAnnotation(),
+            av.getSortAnnotationsBy());
+  }
+
+  /**
    * DOCUMENT ME!
    * 
    * @param g