X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FAlignmentPanel.java;h=5bc46f4c998323fc1b589f0994429eff3a496072;hb=2503f4dfa319a2854d2cc8f7e07e7b979df6bff6;hp=c7ef3cedf42543f8d9cbed9235a6ebd7c97b18b6;hpb=ed2283c5f54da377a2a2fdbdb7aec75ed7041714;p=jalview.git

diff --git a/src/jalview/gui/AlignmentPanel.java b/src/jalview/gui/AlignmentPanel.java
index c7ef3ce..5bc46f4 100644
--- a/src/jalview/gui/AlignmentPanel.java
+++ b/src/jalview/gui/AlignmentPanel.java
@@ -397,14 +397,16 @@ public class AlignmentPanel extends GAlignmentPanel implements
           /*
            * Scroll left to make start of search results visible
            */
-          setScrollValues(start - 1, seqIndex);
+          // setScrollValues(start - 1, seqIndex); // plus one residue
+          setScrollValues(start, seqIndex);
         }
         else if ((endv = av.getEndRes()) <= end)
         {
           /*
            * Scroll right to make end of search results visible
            */
-          setScrollValues(startv + 1 + end - endv, seqIndex);
+          // setScrollValues(startv + 1 + end - endv, seqIndex); // plus one
+          setScrollValues(startv + end - endv, seqIndex);
         }
         else if ((starts = av.getStartSeq()) > seqIndex)
         {
@@ -1614,11 +1616,17 @@ public class AlignmentPanel extends GAlignmentPanel implements
   {
     try
     {
+      if (alignFrame.getSplitViewContainer() != null)
+      {
+        /*
+         * bring enclosing SplitFrame to front first if there is one
+         */
+        ((SplitFrame) alignFrame.getSplitViewContainer()).setSelected(b);
+      }
       alignFrame.setSelected(b);
     } catch (Exception ex)
     {
     }
-    ;
 
     if (b)
     {