X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FAnnotationColourChooser.java;h=f4992177c1494dc1c1f6d6c8ae37e7c0b7b69419;hb=d86deeaf2bf1128ff2d4e610c9a715c9970fb3ad;hp=0209d764985044a049e8d13e7500af04cd9e4bdb;hpb=b01c4edc00dbeedd6b53777310d4232a4104a9ec;p=jalview.git

diff --git a/src/jalview/gui/AnnotationColourChooser.java b/src/jalview/gui/AnnotationColourChooser.java
index 0209d76..f499217 100755
--- a/src/jalview/gui/AnnotationColourChooser.java
+++ b/src/jalview/gui/AnnotationColourChooser.java
@@ -1,6 +1,6 @@
 /*
 * Jalview - A Sequence Alignment Editor and Viewer
-* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+* Copyright (C) 2006 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
 *
 * This program is free software; you can redistribute it and/or
 * modify it under the terms of the GNU General Public License
@@ -49,7 +49,8 @@ public class AnnotationColourChooser
       for (int g = 0; g < allGroups.size(); g++)
       {
         sg = (SequenceGroup) allGroups.get(g);
-        oldgroupColours.put(sg, sg.cs);
+        if(sg.cs!=null)
+          oldgroupColours.put(sg, sg.cs);
       }
     }
     this.av = av;