X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FAnnotationColumnChooser.java;h=589f4bd1e3225bb7336a9f60579b8363dc92d925;hb=4160e6f1fa6aa45849153cce5794faa93e3a19c4;hp=fbc93b54e5b02fa7016dbcc3d2395333f27b690d;hpb=033962da90469745dd6639a1346ecbcbe2ed071f;p=jalview.git

diff --git a/src/jalview/gui/AnnotationColumnChooser.java b/src/jalview/gui/AnnotationColumnChooser.java
index fbc93b5..589f4bd 100644
--- a/src/jalview/gui/AnnotationColumnChooser.java
+++ b/src/jalview/gui/AnnotationColumnChooser.java
@@ -21,6 +21,7 @@
 
 package jalview.gui;
 
+import jalview.datamodel.AlignmentAnnotation;
 import jalview.datamodel.HiddenColumns;
 import jalview.io.cache.JvCacheableInputBox;
 import jalview.schemes.AnnotationColourGradient;
@@ -255,7 +256,7 @@ public class AnnotationColumnChooser extends AnnotationRowFilter
   {
     if (slider.isEnabled())
     {
-      getCurrentAnnotation().threshold.value = slider.getValue() / 1000f;
+      getCurrentAnnotation().threshold.value = getSliderValue();
       updateView();
       propagateSeqAssociatedThreshold(updateAllAnnotation,
               getCurrentAnnotation());
@@ -285,6 +286,7 @@ public class AnnotationColumnChooser extends AnnotationRowFilter
     thresholdValue.setEnabled(true);
     percentThreshold.setEnabled(true);
 
+    final AlignmentAnnotation currentAnnotation = getCurrentAnnotation();
     if (selectedThresholdItem == AnnotationColourGradient.NO_THRESHOLD)
     {
       slider.setEnabled(false);
@@ -295,26 +297,22 @@ public class AnnotationColumnChooser extends AnnotationRowFilter
     }
     else if (selectedThresholdItem != AnnotationColourGradient.NO_THRESHOLD)
     {
-      if (getCurrentAnnotation().threshold == null)
+      if (currentAnnotation.threshold == null)
       {
-        getCurrentAnnotation().setThreshold(new jalview.datamodel.GraphLine(
-                (getCurrentAnnotation().graphMax
-                        - getCurrentAnnotation().graphMin) / 2f,
+        currentAnnotation.setThreshold(new jalview.datamodel.GraphLine(
+                (currentAnnotation.graphMax
+                        - currentAnnotation.graphMin) / 2f,
                 "Threshold", Color.black));
       }
 
       adjusting = true;
-      float range = getCurrentAnnotation().graphMax * 1000
-              - getCurrentAnnotation().graphMin * 1000;
 
-      slider.setMinimum((int) (getCurrentAnnotation().graphMin * 1000));
-      slider.setMaximum((int) (getCurrentAnnotation().graphMax * 1000));
-      slider.setValue(
-              (int) (getCurrentAnnotation().threshold.value * 1000));
+      setSliderModel(currentAnnotation.graphMin,
+              currentAnnotation.graphMax,
+              currentAnnotation.threshold.value);
 
       setThresholdValueText();
 
-      slider.setMajorTickSpacing((int) (range / 10f));
       slider.setEnabled(true);
       thresholdValue.setEnabled(true);
       adjusting = false;
@@ -322,10 +320,10 @@ public class AnnotationColumnChooser extends AnnotationRowFilter
       // build filter params
       filterParams.setThresholdType(
               AnnotationFilterParameter.ThresholdType.NO_THRESHOLD);
-      if (getCurrentAnnotation().isQuantitative())
+      if (currentAnnotation.isQuantitative())
       {
         filterParams
-                .setThresholdValue(getCurrentAnnotation().threshold.value);
+                .setThresholdValue(currentAnnotation.threshold.value);
 
         if (selectedThresholdItem == AnnotationColourGradient.ABOVE_THRESHOLD)
         {
@@ -381,7 +379,7 @@ public class AnnotationColumnChooser extends AnnotationRowFilter
     // adding them to the selection
     av.showAllHiddenColumns();
     av.getColumnSelection().filterAnnotations(
-            getCurrentAnnotation().annotations, filterParams);
+            currentAnnotation.annotations, filterParams);
 
     boolean hideCols = getActionOption() == ACTION_OPTION_HIDE;
     if (hideCols)