X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FAnnotationLabels.java;h=1a9541c3794b0a2b44d34ca02bea69145b767270;hb=3446323f14bb8a2842cb83f74ed3f41c99b62759;hp=f995c60ac20eb89069feaeb5bb2b6802a2d8eef0;hpb=ab4e8d6988969d68d972d308c4159e9b9eb51e84;p=jalview.git

diff --git a/src/jalview/gui/AnnotationLabels.java b/src/jalview/gui/AnnotationLabels.java
index f995c60..1a9541c 100755
--- a/src/jalview/gui/AnnotationLabels.java
+++ b/src/jalview/gui/AnnotationLabels.java
@@ -481,6 +481,7 @@ public class AnnotationLabels extends JPanel implements MouseListener,
             {
               ap.av.setIgnoreGapsConsensus(cbmi.getState(), ap);
             }
+            ap.alignmentChanged();
           }
         });
         pop.add(cbmi);