X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FAnnotationLabels.java;h=26cba7a11bdc2b302c1425771be93ca50047ba85;hb=e542a2b9968ee6a7def19e79e84c27684ee686e3;hp=9c12b894f20c1df6fc2a85cac6dfe8bc586dad0b;hpb=8bce732732fcf8d96f03ff8a916ec2896ff1a4ff;p=jalview.git

diff --git a/src/jalview/gui/AnnotationLabels.java b/src/jalview/gui/AnnotationLabels.java
index 9c12b89..26cba7a 100755
--- a/src/jalview/gui/AnnotationLabels.java
+++ b/src/jalview/gui/AnnotationLabels.java
@@ -84,7 +84,7 @@ public class AnnotationLabels extends JPanel implements MouseListener, MouseMoti
    }
 
    ap.annotationPanel.adjustPanelHeight();
-   ap.RefreshPanels();
+   ap.repaint();
 
   }
 
@@ -156,7 +156,7 @@ public class AnnotationLabels extends JPanel implements MouseListener, MouseMoti
       ap.annotationScroller.setPreferredSize(new Dimension(d.width,d.height - dif));
       d = ap.annotationSpaceFillerHolder.getPreferredSize();
       ap.annotationSpaceFillerHolder.setPreferredSize(new Dimension(d.width,d.height - dif));
-      ap.RefreshPanels();
+      ap.repaint();
     }
     ap.addNotify();
   }
@@ -193,9 +193,15 @@ public class AnnotationLabels extends JPanel implements MouseListener, MouseMoti
 
      x = getWidth() - fm.stringWidth(aa[i].label)-3;
 
+     if(aa[i].isGraph)
+       y+=(aa[i].height/3);
+
      g.drawString(aa[i].label, x, y);
 
-     y+=aa[i].height;
+     if(aa[i].isGraph)
+       y+=(2*aa[i].height/3);
+    else
+       y+=aa[i].height;
    }
 
    if (active)