X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FAnnotationLabels.java;h=45350fdce9a21fe63fc387d6f26ad15d4849eae4;hb=0c83c631f7d7db0baad3335805c15dd40c0aed59;hp=76c711f0ba6f09a823b33d1abbe5ddf21294fabd;hpb=dab7d55392edfa7307e8d7be5f5dde69c9808f30;p=jalview.git

diff --git a/src/jalview/gui/AnnotationLabels.java b/src/jalview/gui/AnnotationLabels.java
index 76c711f..45350fd 100755
--- a/src/jalview/gui/AnnotationLabels.java
+++ b/src/jalview/gui/AnnotationLabels.java
@@ -705,7 +705,7 @@ public class AnnotationLabels extends JPanel
         d = ap.annotationSpaceFillerHolder.getPreferredSize();
         ap.annotationSpaceFillerHolder
                 .setPreferredSize(new Dimension(d.width, d.height - dif));
-        ap.paintAlignment(true);
+        ap.paintAlignment(true, false);
       }
 
       ap.addNotify();
@@ -855,7 +855,7 @@ public class AnnotationLabels extends JPanel
               }
             }
 
-            ap.paintAlignment(false);
+            ap.paintAlignment(false, false);
             PaintRefresher.Refresh(ap, ap.av.getSequenceSetId());
             ap.av.sendSelection();
           }
@@ -912,7 +912,7 @@ public class AnnotationLabels extends JPanel
               sg.addSequence(aa[selectedRow].sequenceRef, false);
             }
             ap.av.setSelectionGroup(sg);
-            ap.paintAlignment(false);
+            ap.paintAlignment(false, false);
             PaintRefresher.Refresh(ap, ap.av.getSequenceSetId());
             ap.av.sendSelection();
           }