X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FAnnotationLabels.java;h=f32a3502f9eadbaa50bf780311b162cd892d0da2;hb=d86deeaf2bf1128ff2d4e610c9a715c9970fb3ad;hp=63d7c532a593e9d670187b956323d145710ed2b2;hpb=d545553b53ac1bd1e29eb72250cdb29745f7292f;p=jalview.git

diff --git a/src/jalview/gui/AnnotationLabels.java b/src/jalview/gui/AnnotationLabels.java
index 63d7c53..f32a350 100755
--- a/src/jalview/gui/AnnotationLabels.java
+++ b/src/jalview/gui/AnnotationLabels.java
@@ -217,7 +217,7 @@ public class AnnotationLabels extends JPanel implements MouseListener,
           SequenceI cons=av.getConsensusSeq();
           if (cons!=null)
             copy_annotseqtoclipboard(cons);
-          
+
         }
 
         ap.annotationPanel.adjustPanelHeight();
@@ -387,8 +387,7 @@ public class AnnotationLabels extends JPanel implements MouseListener,
           cbmi.addActionListener(new ActionListener()
               {public void actionPerformed(ActionEvent e)
                {
-                 ap.av.setIgnoreGapsConsensus(cbmi.getState());
-                 ap.repaint();
+                 ap.av.setIgnoreGapsConsensus(cbmi.getState(), ap);
                }
               });
           pop.add(cbmi);
@@ -442,7 +441,7 @@ public class AnnotationLabels extends JPanel implements MouseListener,
                             region[1]});
         }
       }
-      
+
       Desktop.jalviewClipboard = new Object[]{ seqs,
           ds, // what is the dataset of a consensus sequence ? need to flag sequence as special.
           hiddenColumns};