X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FAnnotationPanel.java;fp=src%2Fjalview%2Fgui%2FAnnotationPanel.java;h=35ae2422c0230971d784fe2beefd1a03681794f0;hb=4f30214e8098748469c6a4269ac2ed6c5750e4b0;hp=16db94c9dae6b19bb807abaa95420fb38a5d7a3e;hpb=9dabc02511e3a334a5749a504f57f69d6c9017bd;p=jalview.git diff --git a/src/jalview/gui/AnnotationPanel.java b/src/jalview/gui/AnnotationPanel.java index 16db94c..35ae242 100755 --- a/src/jalview/gui/AnnotationPanel.java +++ b/src/jalview/gui/AnnotationPanel.java @@ -20,21 +20,6 @@ */ package jalview.gui; -import jalview.datamodel.AlignmentAnnotation; -import jalview.datamodel.AlignmentI; -import jalview.datamodel.Annotation; -import jalview.datamodel.ColumnSelection; -import jalview.datamodel.HiddenColumns; -import jalview.datamodel.SequenceI; -import jalview.renderer.AnnotationRenderer; -import jalview.renderer.AwtRenderPanelI; -import jalview.schemes.ResidueProperties; -import jalview.util.Comparison; -import jalview.util.MessageManager; -import jalview.util.Platform; -import jalview.viewmodel.ViewportListenerI; -import jalview.viewmodel.ViewportRanges; - import java.awt.AlphaComposite; import java.awt.Color; import java.awt.Dimension; @@ -59,13 +44,28 @@ import java.util.ArrayList; import java.util.Collections; import java.util.List; -import javax.swing.JColorChooser; import javax.swing.JMenuItem; import javax.swing.JPanel; import javax.swing.JPopupMenu; import javax.swing.Scrollable; import javax.swing.ToolTipManager; +import jalview.datamodel.AlignmentAnnotation; +import jalview.datamodel.AlignmentI; +import jalview.datamodel.Annotation; +import jalview.datamodel.ColumnSelection; +import jalview.datamodel.HiddenColumns; +import jalview.datamodel.SequenceI; +import jalview.gui.JalviewColourChooser.ColourChooserListener; +import jalview.renderer.AnnotationRenderer; +import jalview.renderer.AwtRenderPanelI; +import jalview.schemes.ResidueProperties; +import jalview.util.Comparison; +import jalview.util.MessageManager; +import jalview.util.Platform; +import jalview.viewmodel.ViewportListenerI; +import jalview.viewmodel.ViewportRanges; + /** * AnnotationPanel displays visible portion of annotation rows below unwrapped * alignment @@ -114,7 +114,7 @@ public class AnnotationPanel extends JPanel implements AwtRenderPanelI, public volatile BufferedImage fadedImage; - Graphics2D gg; + // private Graphics2D gg; public FontMetrics fm; @@ -315,7 +315,7 @@ public class AnnotationPanel extends JPanel implements AwtRenderPanelI, else if (action.equals(LABEL)) { String exMesg = collectAnnotVals(anot, LABEL); - String label = JvOptionPane.showInputDialog(this, + String label = JvOptionPane.showInputDialog( MessageManager.getString("label.enter_label"), exMesg); if (label == null) @@ -347,24 +347,29 @@ public class AnnotationPanel extends JPanel implements AwtRenderPanelI, } else if (action.equals(COLOUR)) { - Color col = JColorChooser.showDialog(this, - MessageManager.getString("label.select_foreground_colour"), - Color.black); - - for (int index : av.getColumnSelection().getSelected()) + final Annotation[] fAnot = anot; + String title = MessageManager + .getString("label.select_foreground_colour"); + ColourChooserListener listener = new ColourChooserListener() { - if (!av.getAlignment().getHiddenColumns().isVisible(index)) + @Override + public void colourSelected(Color c) { - continue; - } - - if (anot[index] == null) - { - anot[index] = new Annotation("", "", ' ', 0); - } - - anot[index].colour = col; - } + HiddenColumns hiddenColumns = av.getAlignment().getHiddenColumns(); + for (int index : av.getColumnSelection().getSelected()) + { + if (hiddenColumns.isVisible(index)) + { + if (fAnot[index] == null) + { + fAnot[index] = new Annotation("", "", ' ', 0); + } + fAnot[index].colour = c; + } + }}; + }; + JalviewColourChooser.showColourChooser(this, + title, Color.black, listener); } else // HELIX, SHEET or STEM @@ -652,14 +657,15 @@ public class AnnotationPanel extends JPanel implements AwtRenderPanelI, @Override public void mouseEntered(MouseEvent evt) { + this.mouseDragging = false; ap.getScalePanel().mouseEntered(evt); } /** - * DOCUMENT ME! + * On leaving the panel, calls ScalePanel.mouseExited to deal with scrolling + * with column selection on a mouse drag * * @param evt - * DOCUMENT ME! */ @Override public void mouseExited(MouseEvent evt) @@ -780,7 +786,9 @@ public class AnnotationPanel extends JPanel implements AwtRenderPanelI, if (row > -1 && ann.annotations != null && column < ann.annotations.length) { - setToolTipText(buildToolTip(ann, column, aa)); + String toolTip = buildToolTip(ann, column, aa); + setToolTipText(toolTip == null ? null + : JvSwingUtils.wrapTooltip(true, toolTip)); String msg = getStatusMessage(av.getAlignment(), column, ann); ap.alignFrame.setStatus(msg); } @@ -827,7 +835,9 @@ public class AnnotationPanel extends JPanel implements AwtRenderPanelI, } /** - * Answers a tooltip for the annotation at the current mouse position + * Answers a tooltip for the annotation at the current mouse position, not + * wrapped in <html> tags (apply if wanted). Answers null if there is no + * tooltip to show. * * @param ann * @param column @@ -840,45 +850,33 @@ public class AnnotationPanel extends JPanel implements AwtRenderPanelI, if (ann.graphGroup > -1) { StringBuilder tip = new StringBuilder(32); - tip.append(""); + boolean first = true; for (int i = 0; i < anns.length; i++) { if (anns[i].graphGroup == ann.graphGroup && anns[i].annotations[column] != null) { + if (!first) + { + tip.append("
"); + } + first = false; tip.append(anns[i].label); String description = anns[i].annotations[column].description; if (description != null && description.length() > 0) { tip.append(" ").append(description); } - tip.append("
"); } } - if (tip.length() != 6) - { - tip.setLength(tip.length() - 4); - tooltip = tip.toString() + ""; - } + tooltip = first ? null : tip.toString(); } else if (column < ann.annotations.length && ann.annotations[column] != null) { - String description = ann.annotations[column].description; - if (description != null && description.length() > 0) - { - tooltip = JvSwingUtils.wrapTooltip(true, description); - } - else - { - tooltip = null; // no tooltip if null or empty description - } - } - else - { - // clear the tooltip. - tooltip = null; + tooltip = ann.annotations[column].description; } + return tooltip; } @@ -988,6 +986,7 @@ public class AnnotationPanel extends JPanel implements AwtRenderPanelI, } private volatile boolean imageFresh = false; + private Rectangle visibleRect = new Rectangle(), clipBounds = new Rectangle(); /** * DOCUMENT ME! @@ -998,17 +997,27 @@ public class AnnotationPanel extends JPanel implements AwtRenderPanelI, @Override public void paintComponent(Graphics g) { - super.paintComponent(g); - + + // BH: note that this method is generally recommended to + // call super.paintComponent(g). Otherwise, the children of this + // component will not be rendered. That is not needed here + // because AnnotationPanel does not have any children. It is + // just a JPanel contained in a JViewPort. + + computeVisibleRect(visibleRect); + g.setColor(Color.white); - g.fillRect(0, 0, getWidth(), getHeight()); + g.fillRect(0, 0, visibleRect.width, visibleRect.height); if (image != null) { - if (fastPaint || (getVisibleRect().width != g.getClipBounds().width) - || (getVisibleRect().height != g.getClipBounds().height)) + // BH 2018 optimizing generation of new Rectangle(). + if (fastPaint || (visibleRect.width != (clipBounds = g.getClipBounds(clipBounds)).width) + || (visibleRect.height != clipBounds.height)) { - g.drawImage(image, 0, 0, this); + + + g.drawImage(image, 0, 0, this); fastPaint = false; return; } @@ -1019,6 +1028,7 @@ public class AnnotationPanel extends JPanel implements AwtRenderPanelI, { return; } + Graphics2D gg; if (image == null || imgWidth != image.getWidth(this) || image.getHeight(this) != getHeight()) { @@ -1054,10 +1064,14 @@ public class AnnotationPanel extends JPanel implements AwtRenderPanelI, gg.setColor(Color.white); gg.fillRect(0, 0, imgWidth, image.getHeight()); imageFresh = true; + } else { + gg = (Graphics2D) image.getGraphics(); + } drawComponent(gg, av.getRanges().getStartRes(), av.getRanges().getEndRes() + 1); + gg.dispose(); imageFresh = false; g.drawImage(image, 0, 0, this); } @@ -1075,7 +1089,7 @@ public class AnnotationPanel extends JPanel implements AwtRenderPanelI, */ public void fastPaint(int horizontal) { - if ((horizontal == 0) || gg == null + if ((horizontal == 0) || image == null || av.getAlignment().getAlignmentAnnotation() == null || av.getAlignment().getAlignmentAnnotation().length < 1 || av.isCalcInProgress()) @@ -1088,6 +1102,8 @@ public class AnnotationPanel extends JPanel implements AwtRenderPanelI, int er = av.getRanges().getEndRes() + 1; int transX = 0; + Graphics2D gg = (Graphics2D) image.getGraphics(); + gg.copyArea(0, 0, imgWidth, getHeight(), -horizontal * av.getCharWidth(), 0); @@ -1107,6 +1123,8 @@ public class AnnotationPanel extends JPanel implements AwtRenderPanelI, gg.translate(-transX, 0); + gg.dispose(); + fastPaint = true; // Call repaint on alignment panel so that repaints from other alignment @@ -1250,7 +1268,7 @@ public class AnnotationPanel extends JPanel implements AwtRenderPanelI, ap = null; image = null; fadedImage = null; - gg = null; +// gg = null; _mwl = null; /* @@ -1304,7 +1322,7 @@ public class AnnotationPanel extends JPanel implements AwtRenderPanelI, * hscroll, status bar, insets. */ int stuff = (ap.getViewName() != null ? 30 : 0) - + (Platform.isAMac() ? 120 : 140); + + (Platform.isAMacAndNotJS() ? 120 : 140); int availableHeight = ap.alignFrame.getHeight() - stuff; int rowHeight = av.getCharHeight();