X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FAnnotationPanel.java;h=77f557bff87a4a488d7e50e8b6171a2a7db2c4ee;hb=58ba1562a8a739699ce47a338803b2641f6d7913;hp=26f6084fe1a0af24cb3301741b34e9ee23d7cfbe;hpb=c7a018d13ea307404b94afd92411de340d4bfa5f;p=jalview.git

diff --git a/src/jalview/gui/AnnotationPanel.java b/src/jalview/gui/AnnotationPanel.java
index 26f6084..77f557b 100755
--- a/src/jalview/gui/AnnotationPanel.java
+++ b/src/jalview/gui/AnnotationPanel.java
@@ -312,7 +312,14 @@ public class AnnotationPanel extends JPanel implements MouseListener, MouseMotio
 
     int res = evt.getX() / av.getCharWidth() + av.getStartRes();
     if(row>-1 && res<aa[row].annotations.length && aa[row].annotations[res]!=null)
+    {
       this.setToolTipText(aa[row].annotations[res].description);
+      StringBuffer text = new StringBuffer("Sequence position " + (res + 1) +
+                                           "  " +
+                                           aa[row].annotations[res].description);
+      ap.alignFrame.statusBar.setText(text.toString());
+    }
+
 
   }
   public void mouseClicked(MouseEvent evt) {}
@@ -330,27 +337,26 @@ public class AnnotationPanel extends JPanel implements MouseListener, MouseMotio
       return;
     }
 
-    imgWidth = (av.endRes-av.startRes) *av.charWidth;
+    imgWidth = (av.endRes-av.startRes+1) *av.charWidth;
 
     image = new BufferedImage(imgWidth,
                                 ap.annotationPanel.getHeight(),
                                 BufferedImage.TYPE_INT_RGB);
       gg = (Graphics2D) image.getGraphics();
-      gg.setColor(Color.white);
-      gg.fillRect(0, 0, imgWidth, getHeight());
       gg.setRenderingHint(RenderingHints.KEY_ANTIALIASING,
                           RenderingHints.VALUE_ANTIALIAS_ON);
-      fm = gg.getFontMetrics();
-      gg.setFont(av.getFont());
 
+      gg.setFont(av.getFont());
+      fm = gg.getFontMetrics();
 
-    drawComponent( gg, av.startRes, av.endRes);
+    drawComponent( gg, av.startRes, av.endRes+1);
     g.drawImage( image, 0, 0, this);
+
   }
 
   public void fastPaint(int horizontal)
 {
-  if(      horizontal ==0
+  if( horizontal == 0
      || av.alignment.getAlignmentAnnotation()==null
      || av.alignment.getAlignmentAnnotation().length<1
     )
@@ -360,7 +366,7 @@ public class AnnotationPanel extends JPanel implements MouseListener, MouseMotio
   }
 
   gg.copyArea( 0,0, imgWidth, getHeight(), -horizontal*av.charWidth, 0 );
-  int sr=av.startRes, er=av.endRes, transX=0;
+  int sr=av.startRes, er=av.endRes+1, transX=0;
 
   if(horizontal>0) // scrollbar pulled right, image to the left
   {
@@ -405,6 +411,7 @@ public class AnnotationPanel extends JPanel implements MouseListener, MouseMotio
     int iconOffset = av.charHeight/2;
     boolean validRes = false;
     //\u03B2 \u03B1
+
     for(int i=0; i<aa.length; i++)
     {
       AlignmentAnnotation row = aa[i];
@@ -448,9 +455,7 @@ public class AnnotationPanel extends JPanel implements MouseListener, MouseMotio
 
        if(validRes && row.annotations[j].displayCharacter.length()>0)
        {
-         int charOffset = (av.charWidth -
-                            fm.charWidth(row.annotations[j].displayCharacter.
-                                         charAt(0))) / 2;
+         int charOffset = (av.charWidth - fm.charWidth(row.annotations[j].displayCharacter.charAt(0)))/2;
          g.setColor( row.annotations[j].colour);
           if(j==0)
           {