X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FAnnotationRowFilter.java;h=166e1ade7cea64dad28db756c90f646123be1fc3;hb=400b50efffaa43ae2c3b4d3f653bf8215c5d1edc;hp=c8bd69c8389cd2f3a97f41205b16379de47990a6;hpb=37de9310bec3501cbc6381e0c3dcb282fcaad812;p=jalview.git

diff --git a/src/jalview/gui/AnnotationRowFilter.java b/src/jalview/gui/AnnotationRowFilter.java
index c8bd69c..166e1ad 100644
--- a/src/jalview/gui/AnnotationRowFilter.java
+++ b/src/jalview/gui/AnnotationRowFilter.java
@@ -366,23 +366,20 @@ public abstract class AnnotationRowFilter extends JPanel
           continue;
         }
 
+        AnnotationColourGradient scheme = null;
         if (currentColours.isSelected())
         {
-          sg.cs = new AnnotationColourGradient(currentAnn, sg.cs,
-                  selectedThresholdOption);
-          ((AnnotationColourGradient) sg.cs).setSeqAssociated(seqAssociated
-                  .isSelected());
-
+          scheme = new AnnotationColourGradient(currentAnn,
+                  sg.getColourScheme(), selectedThresholdOption);
         }
         else
         {
-          sg.cs = new AnnotationColourGradient(currentAnn,
+          scheme = new AnnotationColourGradient(currentAnn,
                   minColour.getBackground(), maxColour.getBackground(),
                   selectedThresholdOption);
-          ((AnnotationColourGradient) sg.cs).setSeqAssociated(seqAssociated
-                  .isSelected());
         }
-
+        scheme.setSeqAssociated(seqAssociated.isSelected());
+        sg.setColourScheme(scheme);
       }
     }
     return false;