X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FAppJmol.java;fp=src%2Fjalview%2Fgui%2FAppJmol.java;h=4dfd18a0e08ccd158b6e28c79d9b260ef0c1ab41;hb=cca50cb3aee94f3ed1a5e504d45b8d8b665f8c5b;hp=fcb31eb57504dc9c45e3060083abd1fe362b9f8f;hpb=40fb076a3e8d71343b081694e586b646aeb1fef4;p=jalview.git

diff --git a/src/jalview/gui/AppJmol.java b/src/jalview/gui/AppJmol.java
index fcb31eb..4dfd18a 100644
--- a/src/jalview/gui/AppJmol.java
+++ b/src/jalview/gui/AppJmol.java
@@ -315,9 +315,9 @@ public class AppJmol extends GStructureViewer implements Runnable,
         // TODO : Fix multiple seq to one chain issue here.
         ap.getStructureSelectionManager().setMapping(seq, chains,
                 alreadyMapped, AppletFormatAdapter.FILE);
-        if (ap.seqPanel.seqCanvas.fr != null)
+        if (ap.getSeqPanel().seqCanvas.fr != null)
         {
-          ap.seqPanel.seqCanvas.fr.featuresAdded();
+          ap.getSeqPanel().seqCanvas.fr.featuresAdded();
           ap.paintAlignment(true);
         }