X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FAppJmol.java;fp=src%2Fjalview%2Fgui%2FAppJmol.java;h=5b935b7d6c18dc70ea019df099d8eedef5e03d20;hb=14488926488f05f802480c508da1cc4ed53c5b1a;hp=cfbac044734f01e2f4148197c233682516ea2d08;hpb=85240f268c71a9d0dc91dc196a93cb10d29794d3;p=jalview.git

diff --git a/src/jalview/gui/AppJmol.java b/src/jalview/gui/AppJmol.java
index cfbac04..5b935b7 100644
--- a/src/jalview/gui/AppJmol.java
+++ b/src/jalview/gui/AppJmol.java
@@ -264,6 +264,8 @@ public class AppJmol extends StructureViewerBase
     }
     jmb.executeCommand(new StructureCommand(command), false);
     jmb.executeCommand(new StructureCommand("set hoverDelay=0.1"), false);
+    jmb.executeCommand(new StructureCommand("set antialiasdisplay on"),
+            false);
     jmb.setFinishedInit(true);
   }
 
@@ -432,7 +434,7 @@ public class AppJmol extends StructureViewerBase
     try
     {
       makePDBImage(null, type, null,
-              BitmapImageSizing.defaultBitmapImageSizing());
+              BitmapImageSizing.defaultBitmapImageSizing(), null);
     } catch (ImageOutputException ioex)
     {
       Console.error("Unexpected error whilst writing " + type.toString(),
@@ -441,7 +443,8 @@ public class AppJmol extends StructureViewerBase
   }
 
   public void makePDBImage(File file, ImageMaker.TYPE type, String renderer,
-          BitmapImageSizing userBis) throws ImageOutputException
+          BitmapImageSizing userBis, List<String> extraCommands)
+          throws ImageOutputException
   {
     int width = getWidth();
     int height = getHeight();
@@ -470,9 +473,24 @@ public class AppJmol extends StructureViewerBase
           }
         }
 
-        jmb.jmolViewer.antialiased = true;
+        String saveStateNameTemp = "JalviewSaveStateTemp";
+        jmb.executeCommand(
+                new StructureCommand("save STATE " + saveStateNameTemp),
+                false);
+
+        if (extraCommands != null)
+        {
+          for (String cmd : extraCommands)
+          {
+            jmb.executeCommand(new StructureCommand(cmd), false);
+          }
+        }
+
         jmb.jmolViewer.requestRepaintAndWait("image export");
         jmb.jmolViewer.renderScreenImage(ig2, usewidth, useheight);
+        jmb.executeCommand(
+                new StructureCommand("restore STATE " + saveStateNameTemp),
+                false);
       }
     };
     String view = MessageManager.getString("action.view")