X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FAppJmol.java;h=0dde2550942de057b4f08f8622e1cd9a07cdec04;hb=aa643d0f2f5f506df2771e216af1618549d32050;hp=581dc3dc9467ea16f9cd6e03885be9f25619d6ab;hpb=26eac0ada672f0b0377054cef2899c1161931655;p=jalview.git

diff --git a/src/jalview/gui/AppJmol.java b/src/jalview/gui/AppJmol.java
index 581dc3d..0dde255 100644
--- a/src/jalview/gui/AppJmol.java
+++ b/src/jalview/gui/AppJmol.java
@@ -183,7 +183,10 @@ public class AppJmol extends StructureViewerBase
     useAlignmentPanelForColourbyseq(ap);
 
     alignAddedStructures = alignAdded;
-    useAlignmentPanelForSuperposition(ap);
+    if (pdbentrys.length > 1)
+    {
+      useAlignmentPanelForSuperposition(ap);
+    }
 
     jmb.setColourBySequence(true);
     setSize(400, 400); // probably should be a configurable/dynamic default here