X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FAppJmol.java;h=669a52ff331a6bfe202a6a3f921a315da750be67;hb=497958b4e5217efaa3ddeece38f38c3a6e98cb96;hp=fcb31eb57504dc9c45e3060083abd1fe362b9f8f;hpb=70fd4c40d0b2046c6d402e365e4d04f9cfbb68ef;p=jalview.git

diff --git a/src/jalview/gui/AppJmol.java b/src/jalview/gui/AppJmol.java
index fcb31eb..669a52f 100644
--- a/src/jalview/gui/AppJmol.java
+++ b/src/jalview/gui/AppJmol.java
@@ -1074,7 +1074,7 @@ public class AppJmol extends GStructureViewer implements Runnable,
       // Set the colour using the current view for the associated alignframe
       for (AlignmentPanel ap : _colourwith)
       {
-        jmb.colourBySequence(ap.av.showSequenceFeatures, ap);
+        jmb.colourBySequence(ap.av.isShowSequenceFeatures(), ap);
       }
     }
   }