X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FAppJmol.java;h=ffc80534aad61e1c6804c54e9f7e66e6cad08754;hb=4a67afac64ed574a5b79c7d33c97e58e26f60f30;hp=4058cda92763bb28cce91bd5fcb1af73d4f98935;hpb=4f30214e8098748469c6a4269ac2ed6c5750e4b0;p=jalview.git

diff --git a/src/jalview/gui/AppJmol.java b/src/jalview/gui/AppJmol.java
index 4058cda..ffc8053 100644
--- a/src/jalview/gui/AppJmol.java
+++ b/src/jalview/gui/AppJmol.java
@@ -344,8 +344,10 @@ public class AppJmol extends StructureViewerBase
       try
       {
         Cache.log.debug("Waiting around for jmb notify.");
-        Thread.sleep(waitFor);
         waitTotal += waitFor;
+
+        // Thread.sleep() throws an exception in JS
+        Thread.sleep(waitFor);
       } catch (Exception e)
       {
       }