X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FAppJmolBinding.java;fp=src%2Fjalview%2Fgui%2FAppJmolBinding.java;h=b7617cebffc55d94aaa002795b36bb17d34d8381;hb=c0aaf84826ff25d510846bd1099e10809c4df711;hp=131f5bb17d6476f30351376837f402f66c56a0f6;hpb=31f1b88951cc5ff3aea7ae0bc1a9d8fbdd264ea3;p=jalview.git

diff --git a/src/jalview/gui/AppJmolBinding.java b/src/jalview/gui/AppJmolBinding.java
index 131f5bb..b7617ce 100644
--- a/src/jalview/gui/AppJmolBinding.java
+++ b/src/jalview/gui/AppJmolBinding.java
@@ -55,11 +55,11 @@ public class AppJmolBinding extends JalviewJmolBinding
   {
     AlignmentPanel ap = (alignment == null) ? appJmolWindow.getAlignmentPanel()
             : (AlignmentPanel) alignment;
-    if (ap.av.showSequenceFeatures)
+    if (ap.av.isShowSequenceFeatures())
     {
       if (fr == null)
       {
-        fr = ap.cloneFeatureRenderer();
+        fr = (jalview.gui.FeatureRenderer) ap.cloneFeatureRenderer();
       }
       else
       {
@@ -132,7 +132,7 @@ public class AppJmolBinding extends JalviewJmolBinding
     }
     if (!isLoadingFromArchive())
     {
-      colourBySequence(ap.av.getShowSequenceFeatures(), ap);
+      colourBySequence(ap.av.isShowSequenceFeatures(), ap);
     }
   }